RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 VCX3AQ9NNX9 186 aa17.49■□□□□ 0.39
C9orf3-206ENST00000428313 KBTBD4Q9NVX7 518 aa17.49■□□□□ 0.39
C9orf3-206ENST00000428313 LRCH1Q9Y2L9 728 aa17.49■□□□□ 0.39
C9orf3-206ENST00000428313 NOC2LQ9Y3T9 749 aaKnown RBP17.49■□□□□ 0.39
C9orf3-206ENST00000428313 TJP1Q07157 1748 aa17.49■□□□□ 0.39
C9orf3-206ENST00000428313 ATP5J2-PTCD1G3V325 749 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 PTCD1O75127 700 aaKnown RBP17.48■□□□□ 0.39
C9orf3-206ENST00000428313 SF3A3Q12874 501 aaKnown RBP eCLIP17.48■□□□□ 0.393e-7■■■■□ 26.1
C9orf3-206ENST00000428313 TNFAIP8L3Q5GJ75 292 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 WASHC2DQ5SRD0 308 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 DENND2CQ68D51 928 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 TAOK1Q7L7X3 1001 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 RASGEF1CQ8N431 466 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 UTP4Q969X6 686 aaKnown RBP17.48■□□□□ 0.39
C9orf3-206ENST00000428313 AZIN2Q96A70 460 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 AZI2Q9H6S1 392 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 MAGEF1Q9HAY2 307 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 CNOT7Q9UIV1 285 aaKnown RBP17.48■□□□□ 0.39
C9orf3-206ENST00000428313 GGT7Q9UJ14 662 aa17.48■□□□□ 0.39
C9orf3-206ENST00000428313 LMNAP02545 664 aaKnown RBP17.47■□□□□ 0.39
C9orf3-206ENST00000428313 FOXB2Q5VYV0 432 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 NCSTNQ92542 709 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 TMEM237Q96Q45 408 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 TRIM33Q9UPN9 1127 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 RTL9Q8NET4 1388 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 KRIT1O00522 736 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 ZBTB48P10074 688 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-206ENST00000428313 SLC18A3Q16572 532 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 ANKLE2Q86XL3 938 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 ATP8B4Q8TF62 1192 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 RBM17Q96I25 401 aaKnown RBP17.47■□□□□ 0.39
C9orf3-206ENST00000428313 NDNQ99608 321 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 ETNK1Q9HBU6 452 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 AMACRQ9UHK6 382 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 GMEB1Q9Y692 573 aa17.47■□□□□ 0.39
C9orf3-206ENST00000428313 CYP27B1O15528 508 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 PTDSS1P48651 473 aaKnown RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 PMS2P54278 862 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 NLRP5P59047 1200 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 ZC3H6P61129 1189 aaKnown RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 MKRN3Q13064 507 aaKnown RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 ACVR2BQ13705 512 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 NPY5RQ15761 445 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 SFMBT2Q5VUG0 894 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 ZNF790Q6PG37 636 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 MFSD6Q6ZSS7 791 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 THEMISQ8N1K5 641 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 PLBD2Q8NHP8 589 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 PTPRN2Q92932 1015 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 AP1M1Q9BXS5 423 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 CUEDC2Q9H467 287 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 FGFR1OP2Q9NVK5 253 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 PDP2Q9P2J9 529 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 TTI1O43156 1089 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 IFNAR2P48551 515 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 SH3BGRP55822 239 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 IFI35P80217 286 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 DBN1Q16643 649 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 ZNF594Q96JF6 807 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 ZNF333Q96JL9 665 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 NUDCD1Q96RS6 583 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 STRBPQ96SI9 672 aaKnown RBP17.46■□□□□ 0.39
C9orf3-206ENST00000428313 CEP72Q9P209 647 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 KIF1AQ12756 1690 aa17.46■□□□□ 0.39
C9orf3-206ENST00000428313 FGFR1OPO95684 399 aaKnown RBP17.45■□□□□ 0.38
C9orf3-206ENST00000428313 MUM1Q2TAK8 710 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 C10orf76Q5T2E6 689 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 LZICQ8WZA0 190 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 INPP5DQ92835 1189 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 AIPL1Q9NZN9 384 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 ATP6V0A2Q9Y487 856 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 TACC3Q9Y6A5 838 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 SPATA31A3Q5VYP0 1347 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 TCP11X1B4DZS4 312 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 POU5F1Q01860 360 aaKnown RBP17.45■□□□□ 0.38
C9orf3-206ENST00000428313 FUT2Q10981 343 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 ZNF526Q8TF50 670 aaPredicted RBP17.45■□□□□ 0.38
C9orf3-206ENST00000428313 FBXO41Q8TF61 875 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 CCDC28BQ9BUN5 200 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 PUS3Q9BZE2 481 aaKnown RBP17.45■□□□□ 0.38
C9orf3-206ENST00000428313 C1orf167Q5SNV9 1468 aa17.45■□□□□ 0.38
C9orf3-206ENST00000428313 NVLO15381 856 aaKnown RBP17.44■□□□□ 0.38
C9orf3-206ENST00000428313 MYLK4Q86YV6 388 aaPredicted RBP17.44■□□□□ 0.38
C9orf3-206ENST00000428313 C4orf32Q8N8J7 132 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 PHC3Q8NDX5 983 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 ZNF512BQ96KM6 892 aaPredicted RBP17.44■□□□□ 0.38
C9orf3-206ENST00000428313 NAPBQ9H115 298 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 DPH5Q9H2P9 285 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 ZDHHC18Q9NUE0 388 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 KLHL14Q9P2G3 628 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 ZNF232Q9UNY5 417 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 NKRFO15226 690 aaKnown RBP eCLIP17.44■□□□□ 0.382e-9■■■■□ 24.8
C9orf3-206ENST00000428313 SKIP12755 728 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 GSTT1P30711 240 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 MCM7P33993 719 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 PDE4DQ08499 809 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 PPP2R5EQ16537 467 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 CENPPQ6IPU0 288 aa17.44■□□□□ 0.38
C9orf3-206ENST00000428313 MFSD5Q6N075 450 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms