RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CFAP73A6NFT4 308 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 KRT1P04264 644 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 RINT1Q6NUQ1 792 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 LRRC37BQ96QE4 947 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 POLD4Q9HCU8 107 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 FGFR1OP2Q9NVK5 253 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 PLA2G4BP0C869 781 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 PLS3P13797 630 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 SLFN13Q68D06 897 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 TRIML2Q8N7C3 387 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 CEP72Q9P209 647 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 RPAP1Q9BWH6 1393 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 QRICH2Q9H0J4 1663 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 DIP2CQ9Y2E4 1556 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 ZBED4O75132 1171 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 BTDP43251 543 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 DCLK2Q8N568 766 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 PPARGC1AQ9UBK2 798 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 G3BP2Q9UN86 482 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 SCINQ9Y6U3 715 aa21.05■□□□□ 0.96
CCDC88B-202ENST00000356786 EIF3HO15372 352 aaKnown RBP eCLIP21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 SPAG7O75391 227 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 CHGBP05060 677 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 TBC1D10BQ4KMP7 808 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 PYROXD1Q8WU10 500 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 ATG3Q9NT62 314 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 CPP00450 1065 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 PIK3CAP42336 1068 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 PMS2P54278 862 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 CCT8L2Q96SF2 557 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 ANKARQ7Z5J8 1434 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 CFLARO15519 480 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 DNAJC8O75937 253 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 KRT3P12035 628 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 BRAFP15056 766 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 ECE1P42892 770 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 PDIK1LQ8N165 341 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 NSMCE1Q8WV22 266 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 COA7Q96BR5 231 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 DRC3Q9H069 523 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 CAMSAP1Q5T5Y3 1602 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 NCF2P19878 526 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 GABPAQ06546 454 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 LRRC14Q15048 493 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 MUM1L1Q5H9M0 696 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 AMNQ9BXJ7 453 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 MRPL47Q9HD33 250 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 FBXL5Q9UKA1 691 aa21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 PACSIN2Q9UNF0 486 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-202ENST00000356786 TMEM191BP0C7N4 346 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 MXI1P50539 228 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 CENPUQ71F23 418 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 KRT26Q7Z3Y9 468 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 NME8Q8N427 588 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 OXER1Q8TDS5 423 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 PARP3Q9Y6F1 533 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 RAD23BP54727 409 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 JDP2Q8WYK2 163 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 PSD3Q9NYI0 1048 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 CPSF1Q10570 1443 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 GOLGA8SH3BPF8 625 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 ELF1P32519 619 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 FAM83BQ5T0W9 1011 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 TTC17Q96AE7 1141 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 MIS12Q9H081 205 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 PIH1D3Q9NQM4 214 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 SUFUQ9UMX1 484 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 TNNC2P02585 160 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 MDH1P40925 334 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 GPATCH4Q5T3I0 446 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 RAPH1Q70E73 1250 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 GLG1Q92896 1179 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 STRBPQ96SI9 672 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 TMEM60Q9H2L4 133 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 HESX1Q9UBX0 185 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 MRPL11Q9Y3B7 192 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 MAP3K15Q6ZN16 1313 aa21.03■□□□□ 0.96
CCDC88B-202ENST00000356786 MIF4GDA9UHW6 222 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 H0YCG3 227 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 MCF2LO15068 1137 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 TAF12Q16514 161 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 ASPRV1Q53RT3 343 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 TRAIPQ9BWF2 469 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 EPN3Q9H201 632 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 ECT2Q9H8V3 914 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 CCNL1Q9UK58 526 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 SEC23IPQ9Y6Y8 1000 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 ECM2O94769 699 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 UNC13DQ70J99 1090 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 METTL16Q86W50 562 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 HDAC11Q96DB2 347 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 CHP1Q99653 195 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 SAYSD1Q9NPB0 183 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 BAG5Q9UL15 447 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 ICA1Q05084 483 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 NYAP1Q6ZVC0 841 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 GINM1Q9NU53 330 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 ZFP69BQ9UJL9 534 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 SYNGAP1Q96PV0 1343 aa21.02■□□□□ 0.96
CCDC88B-202ENST00000356786 USP17L2Q6R6M4 530 aa21.02■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms