RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 L3MBTL3Q96JM7 780 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 ARHGEF3Q9NR81 526 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 ZSCAN32Q9NX65 697 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 RRN3Q9NYV6 651 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PTGFRNQ9P2B2 879 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 IGSF9Q9P2J2 1179 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 SPDYE3A6NKU9 549 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 MKRN2OSH3BPM6 223 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 SRGAP3O43295 1099 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 RPP40O75818 363 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 ALPPP05187 535 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 SARSP49591 514 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PPATQ06203 517 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PPIL2Q13356 520 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 TTLL4Q14679 1199 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 EMC10Q5UCC4 262 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 IER5Q5VY09 327 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 GDF7Q7Z4P5 450 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PLEKHO2Q8TD55 490 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PARD3BQ8TEW8 1205 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 LPAR1Q92633 364 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 ARRDC1-AS1Q9H2J1 176 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 SEMA6CQ9H3T2 930 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 SEMA4GQ9NTN9 838 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 DZANK1Q9NVP4 752 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 KCNK4Q9NYG8 393 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 CSPG4Q6UVK1 2322 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PZPP20742 1482 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 COL17A1Q9UMD9 1497 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 DNMBPQ6XZF7 1577 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF521Q96K83 1311 aa3.13□□□□□ -1.91
CCDC88A-205ENST00000426576 PLEKHG1Q9ULL1 1385 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 A0A0B4J269 797 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 GNAT3A8MTJ3 354 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 GRXCR1A8MXD5 290 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 LRCH4O75427 683 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 KIF20AO95235 890 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 WISP1O95388 367 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 HMOX1P09601 288 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ARP10275 920 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 NEK4P51957 841 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 TMPRSS3P57727 454 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 GPSM2P81274 684 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 MC1RQ01726 317 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 HSP90AB4PQ58FF6 505 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 HDGFL1Q5TGJ6 251 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 PRR5LQ6MZQ0 368 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ALKBH2Q6NS38 261 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 C16orf46Q6P387 395 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L2Q6R6M4 530 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ISLR2Q6UXK2 745 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 SP8Q8IXZ3 490 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CHURC1Q8WUH1 139 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 RABGGTAQ92696 567 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 IRF7Q92985 503 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 PSMD1Q99460 953 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 TRMT61BQ9BVS5 477 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 FAM126AQ9BYI3 521 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 POLR3AO14802 1390 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 RFXAPO00287 272 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 POLR2DO15514 142 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 IDH1O75874 414 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CXCL14O95715 111 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CALML3P27482 149 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 AKT1P31749 480 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 VIPR1P32241 457 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 AVPR1AP37288 418 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 RPIAP49247 311 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 SMSP52788 366 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 TRIM61Q5EBN2 209 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 DIEXFQ68CQ4 756 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 NOSTRINQ8IVI9 506 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CEP97Q8IW35 865 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CELF5Q8N6W0 485 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 C3orf56Q8N813 242 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 REPS2Q8NFH8 660 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ASIC4Q96FT7 647 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 OCEL1Q9H607 264 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 SH3BGRL2Q9UJC5 107 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 KDM5BQ9UGL1 1544 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 NCOA3Q9Y6Q9 1424 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 SLC25A27O95847 323 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 IDEP14735 1019 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 IL9P15248 144 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CLCN5P51795 746 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 EIF2B5Q13144 721 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 GRAPQ13588 217 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 LYPLAL1Q5VWZ2 237 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 TWF2Q6IBS0 349 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 MFSD5Q6N075 450 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 GLIS1Q8NBF1 620 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 GRAPLQ8TC17 118 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF512Q96ME7 567 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 SCNM1Q9BWG6 230 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 TRIM9Q9C026 710 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 LMAN2LQ9H0V9 348 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 OSBPL2Q9H1P3 480 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ADAMTS5Q9UNA0 930 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ZFYVE9O95405 1425 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CCDC171Q6TFL3 1326 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms