RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 SPEF2Q9C093 1822 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 PPIP5K2O43314 1243 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 HSPA9P38646 679 aaKnown RBP12.92□□□□□ -0.34
HDAC4-210ENST00000493582 CDK17Q00537 523 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 FAM69CQ0P6D2 419 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 UBE3CQ15386 1083 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 NBPF9Q3BBW0 867 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 PIK3AP1Q6ZUJ8 805 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 BZW1Q7L1Q6 419 aaKnown RBP12.92□□□□□ -0.34
HDAC4-210ENST00000493582 ANKLE2Q86XL3 938 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 C1orf131Q8NDD1 294 aaKnown RBP12.92□□□□□ -0.34
HDAC4-210ENST00000493582 MDM1Q8TC05 714 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 TATDN2Q93075 761 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 KRT23Q9C075 422 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 SPATA31A3Q5VYP0 1347 aa12.92□□□□□ -0.34
HDAC4-210ENST00000493582 SIPA1L3O60292 1781 aaPredicted RBP12.92□□□□□ -0.34
HDAC4-210ENST00000493582 PP2D1A8MPX8 630 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 H0YGN5 161 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 ADAMTS3O15072 1205 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 MBD4O95243 580 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 BMP15O95972 392 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 GCP02774 474 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 TATP17735 454 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 ANKRD40Q6AI12 368 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 TBC1D1Q86TI0 1168 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 NOX5Q96PH1 765 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 RNF26Q9BY78 433 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 PLCB1Q9NQ66 1216 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 SPATS2LQ9NUQ6 558 aaKnown RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 NFS1Q9Y697 457 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 SOS2Q07890 1332 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 TMEM94Q12767 1356 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 F8W031 263 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 IRF6O14896 467 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 DNAJC8O75937 253 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 PLEKHA8P1O95397 391 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 SLC1A4P43007 532 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 FAM43BQ6ZT52 329 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 RRAGAQ7L523 313 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 PARD3BQ8TEW8 1205 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 ZBTB10Q96DT7 871 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 MMRN2Q9H8L6 949 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 CNNM2Q9H8M5 875 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 EBF2Q9HAK2 575 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 LRRC4CQ9HCJ2 640 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 SLC39A2Q9NP94 309 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 BAZ2BQ9UIF8 2168 aaKnown RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 SMIM22K7EJ46 135 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 MAGOHP61326 146 aaKnown RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 PPP2R2AP63151 447 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 HLFQ16534 295 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 METTL24Q5JXM2 366 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 MICAL1Q8TDZ2 1067 aa12.91□□□□□ -0.34
HDAC4-210ENST00000493582 MAGOHBQ96A72 148 aaKnown RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 RBM28Q9NW13 759 aaKnown RBP12.91□□□□□ -0.34
HDAC4-210ENST00000493582 C5orf60A6NFR6 353 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 PALMO75781 387 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 TRIM37O94972 964 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 ERVK-9P63128 1117 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 EHHADHQ08426 723 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 NPY5RQ15761 445 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 NAALADL2Q58DX5 795 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 KDM4CQ9H3R0 1056 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 TAF1DQ9H5J8 278 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-210ENST00000493582 TRPC6Q9Y210 931 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 C15orf41Q9Y2V0 281 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 TCRBV5S4A2TA0A5A2 114 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 LRRC53A6NM62 1247 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 GSG1L2A8MUP6 293 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 KLRC4O43908 158 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 KCNA6P17658 529 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 FLT3P36888 993 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 C3orf20Q8ND61 904 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 UBLCP1Q8WVY7 318 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-210ENST00000493582 TNFRSF25Q93038 417 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 SAAL1Q96ER3 474 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 PANK4Q9NVE7 773 aa12.9□□□□□ -0.34
HDAC4-210ENST00000493582 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.9□□□□□ -0.346e-7■■■■□ 19.8
HDAC4-210ENST00000493582 NFAT5O94916 1531 aa12.9□□□□□ -0.35
HDAC4-210ENST00000493582 ARHGAP23Q9P227 1491 aa12.9□□□□□ -0.35
HDAC4-210ENST00000493582 KLHL33A6NCF5 533 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 EIF4E1BA6NMX2 242 aaKnown RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 DRD4P21917 467 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 CCDC63Q8NA47 563 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 GIMAP8Q8ND71 665 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 SPAG5Q96R06 1193 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 NEUROG2Q9H2A3 272 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 A0A1W2PQJ5 194 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 CCT8L1PA6NM43 557 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 AP1G2O75843 785 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 UPP2O95045 317 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 ECHS1P30084 290 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 CDCA2Q69YH5 1023 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 CAPRIN2Q6IMN6 1127 aaKnown RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 MAGEB6Q8N7X4 407 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 FAM89AQ96GI7 184 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 ERGIC2Q96RQ1 377 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 VEGFAP15692 232 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-210ENST00000493582 PHKG2P15735 406 aa12.89□□□□□ -0.35
HDAC4-210ENST00000493582 HNRNPH3P31942 346 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms