RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS13A-201ENST00000355766 OR13H1Q8NG92 308 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 MEIS3Q99687 375 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 GDF15Q99988 308 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 USP44Q9H0E7 712 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 AKTIPQ9H8T0 292 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 MTMR10Q9NXD2 777 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 ZNF70Q9UC06 446 aaPredicted RBP8.48□□□□□ -1.05
VPS13A-201ENST00000355766 F6X3S4 739 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 SGPL1O95470 568 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 IGKV5-2P06315 115 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 ZAP70P43403 619 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 PRKCZQ05513 592 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 CHRNDQ07001 517 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 PPIL2Q13356 520 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 LRP8Q14114 963 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 LRIT3Q3SXY7 679 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 SLC4A10Q6U841 1118 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 ZNF804AQ7Z570 1209 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 CHD1LQ86WJ1 897 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 ERO1BQ86YB8 467 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 SIRT2Q8IXJ6 389 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 TMEM130Q8N3G9 435 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 TMEM39BQ9GZU3 492 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 MRPL18Q9H0U6 180 aaKnown RBP8.47□□□□□ -1.05
VPS13A-201ENST00000355766 SRA1Q9HD15 236 aaKnown RBP8.47□□□□□ -1.05
VPS13A-201ENST00000355766 FAM13BQ9NYF5 915 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 BIN2Q9UBW5 565 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-201ENST00000355766 CPA4Q9UI42 421 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 MAP3K2Q9Y2U5 619 aa8.47□□□□□ -1.05
VPS13A-201ENST00000355766 F8W735 103 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-201ENST00000355766 SNAP23O00161 211 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 GRM8O00222 908 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 HYAL3O43820 417 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-201ENST00000355766 RAB11FIP3O75154 756 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 CAPN2P17655 700 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 TNNI2P48788 182 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 ATP8B2P98198 1209 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 BMP2KLQ5H9B9 411 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 PRR23CQ6ZRP0 262 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 ANKRD23Q86SG2 305 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 GPR152Q8TDT2 470 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 SSH3Q8TE77 659 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 CLP1Q92989 425 aaKnown RBP8.46□□□□□ -1.06
VPS13A-201ENST00000355766 WRNIP1Q96S55 665 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 MPHOSPH8Q99549 860 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 BACH2Q9BYV9 841 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 TDRD3Q9H7E2 651 aaKnown RBP8.46□□□□□ -1.06
VPS13A-201ENST00000355766 STIM2Q9P246 746 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 SERPINA10Q9UK55 444 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 JAG2Q9Y219 1238 aa8.46□□□□□ -1.06
VPS13A-201ENST00000355766 A0A1B0GUL6 1792 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 MYH3P11055 1940 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 TCP10L2B9ZVM9 353 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 FCGRTP55899 365 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 MAP4K3Q8IVH8 894 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 TDHQ8IZJ6 230 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 PLA2G12BQ9BX93 195 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 PPME1Q9Y570 386 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 RPTORQ8N122 1335 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 RPAP1Q9BWH6 1393 aaPredicted RBP8.45□□□□□ -1.06
VPS13A-201ENST00000355766 VCANP13611 3396 aa8.45□□□□□ -1.06
VPS13A-201ENST00000355766 PDHXO00330 501 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 ATP11AP98196 1134 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 PPATQ06203 517 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 HYAL2Q12891 473 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 GCKRQ14397 625 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 CWF19L2Q2TBE0 894 aaKnown RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 TTC39BQ5VTQ0 682 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 UBE3BQ7Z3V4 1068 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 ERC1Q8IUD2 1116 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 C7orf61Q8IZ16 206 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 CACTIN-AS1Q8N1I8 211 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 DIS3LQ8TF46 1054 aaKnown RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 ZKSCAN4Q969J2 545 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 DEFB118Q96PH6 123 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 PAK6Q9NQU5 681 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 C9orf78Q9NZ63 289 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 ZMYND8Q9ULU4 1186 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 GABRQQ9UN88 632 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 TTF2Q9UNY4 1162 aaKnown RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 FNDC3AQ9Y2H6 1198 aaKnown RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 NOP58Q9Y2X3 529 aaKnown RBP8.44□□□□□ -1.06
VPS13A-201ENST00000355766 FAM205AQ6ZU69 1335 aa8.44□□□□□ -1.06
VPS13A-201ENST00000355766 ADCY3O60266 1144 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 TAF5LO75529 589 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 TFRCP02786 760 aaKnown RBP8.43□□□□□ -1.06
VPS13A-201ENST00000355766 CSF1RP07333 972 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 CRKP46108 304 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 RABL6Q3YEC7 729 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-201ENST00000355766 MFSD14BQ5SR56 506 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 CEP135Q66GS9 1140 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 NECAB2Q7Z6G3 386 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 AGGF1Q8N302 714 aaeCLIP8.43□□□□□ -1.06
VPS13A-201ENST00000355766 GALNT11Q8NCW6 608 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 PAWRQ96IZ0 340 aaKnown RBP8.43□□□□□ -1.06
VPS13A-201ENST00000355766 PARK7Q99497 189 aaKnown RBP8.43□□□□□ -1.06
VPS13A-201ENST00000355766 LACRTQ9GZZ8 138 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 MUC3BQ9H195 1237 aa8.43□□□□□ -1.06
VPS13A-201ENST00000355766 C1orf115Q9H7X2 142 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms