RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 RGMBQ6NW40 437 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 KRT25Q7Z3Z0 450 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 MB21D1Q8N884 522 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 OXER1Q8TDS5 423 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 PSTPIP2Q9H939 334 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 CCL15-CCL14A0A0B4J2E2 113 aa17.69■□□□□ 0.42
UPF1-206ENST00000598471 SPDYE16A6NNV3 312 aaPredicted RBP17.69■□□□□ 0.42
UPF1-206ENST00000598471 GRM1Q13255 1194 aa17.69■□□□□ 0.42
UPF1-206ENST00000598471 CCL15Q16663 113 aa17.69■□□□□ 0.42
UPF1-206ENST00000598471 FAM173BQ6P4H8 233 aa17.69■□□□□ 0.42
UPF1-206ENST00000598471 PAXIP1Q6ZW49 1069 aaPredicted RBP17.69■□□□□ 0.42
UPF1-206ENST00000598471 GTF3C2Q8WUA4 911 aaPredicted RBP17.69■□□□□ 0.42
UPF1-206ENST00000598471 SCAND2PQ9GZW5 306 aaPredicted RBP17.69■□□□□ 0.42
UPF1-206ENST00000598471 ADAMTS5Q9UNA0 930 aa17.69■□□□□ 0.42
UPF1-206ENST00000598471 SLC45A1Q9Y2W3 748 aa17.69■□□□□ 0.42
UPF1-206ENST00000598471 MCM4P33991 863 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 MKRN3Q13064 507 aaKnown RBP17.68■□□□□ 0.42
UPF1-206ENST00000598471 MOGSQ13724 837 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 RASAL3Q86YV0 1011 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 CPXCR1Q8N123 301 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 TNFRSF25Q93038 417 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 HHIPL1Q96JK4 782 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 CAPNS2Q96L46 248 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 ZIC5Q96T25 663 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 ASCC2Q9H1I8 757 aaPredicted RBP17.68■□□□□ 0.42
UPF1-206ENST00000598471 RAVER2Q9HCJ3 691 aaKnown RBP17.68■□□□□ 0.42
UPF1-206ENST00000598471 PCDHA6Q9UN73 950 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 PCDHA8Q9Y5H6 950 aa17.68■□□□□ 0.42
UPF1-206ENST00000598471 MANSC4A6NHS7 340 aaPredicted RBP17.67■□□□□ 0.42
UPF1-206ENST00000598471 FIBPO43427 364 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 AOC2O75106 756 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 TRAPPC10P48553 1259 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 NONOQ15233 471 aaKnown RBP eCLIP17.67■□□□□ 0.42
UPF1-206ENST00000598471 TKFCQ3LXA3 575 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 GPAT2Q6NUI2 795 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 LBX2Q6XYB7 198 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 PIK3AP1Q6ZUJ8 805 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 ANKRD23Q86SG2 305 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 MCF2L2Q86YR7 1114 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 CCDC102AQ96A19 550 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 MS4A4AQ96JQ5 239 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 TEX13BQ9BXU2 312 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 CNPY2Q9Y2B0 182 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 PARP14Q460N5 1801 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 ZNF536O15090 1300 aa17.67■□□□□ 0.42
UPF1-206ENST00000598471 FAM155AB1AL88 458 aaPredicted RBP17.66■□□□□ 0.42
UPF1-206ENST00000598471 M0R2N6 131 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 ATP2A1O14983 1001 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 SLC10A3P09131 477 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 ALAS1P13196 640 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 HERVK_113P62684 666 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 AP3B2Q13367 1082 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 REPS2Q8NFH8 660 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 RASGRP4Q8TDF6 673 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 AGBL1Q96MI9 1066 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 BIN2Q9UBW5 565 aaPredicted RBP17.66■□□□□ 0.42
UPF1-206ENST00000598471 CEP131Q9UPN4 1083 aa17.66■□□□□ 0.42
UPF1-206ENST00000598471 GCOM1H8Y6P7 765 aaPredicted RBP17.65■□□□□ 0.42
UPF1-206ENST00000598471 FOSP01100 380 aaPredicted RBP17.65■□□□□ 0.42
UPF1-206ENST00000598471 POLR2MP0CAP2 368 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 NFKBIBQ15653 356 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 JAKMIP3Q5VZ66 844 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 SNRNP48Q6IEG0 339 aaKnown RBP17.65■□□□□ 0.42
UPF1-206ENST00000598471 SAMD3Q8N6K7 520 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 BRI3BPQ8WY22 251 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 SPATA32Q96LK8 384 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 USP28Q96RU2 1077 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 P2RX7Q99572 595 aaKnown RBP17.65■□□□□ 0.42
UPF1-206ENST00000598471 POLR3EQ9NVU0 708 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 RTEL1Q9NZ71 1219 aa17.65■□□□□ 0.42
UPF1-206ENST00000598471 TFIP11Q9UBB9 837 aaKnown RBP17.65■□□□□ 0.42
UPF1-206ENST00000598471 ZNF214Q9UL59 606 aaPredicted RBP17.65■□□□□ 0.42
UPF1-206ENST00000598471 RLFQ13129 1914 aa17.64■□□□□ 0.42
UPF1-206ENST00000598471 MYH15Q9Y2K3 1946 aa17.64■□□□□ 0.42
UPF1-206ENST00000598471 SPDYE3A6NKU9 549 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 BTBD19C9JJ37 291 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 PIK3CDO00329 1044 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 PDHXO00330 501 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 YEATS4O95619 227 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 BMP15O95972 392 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 COPB2P35606 906 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 STAT3P40763 770 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 CLK2P49760 499 aaKnown RBP17.64■□□□□ 0.41
UPF1-206ENST00000598471 PLS1Q14651 629 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 TMEM132BQ14DG7 1078 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 STK38Q15208 465 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 UBE2SQ16763 222 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 ANO1Q5XXA6 986 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 TMEM87AQ8NBN3 555 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 CHAMP1Q96JM3 812 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 MAF1Q9H063 256 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 EHMT1Q9H9B1 1298 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 RNF146Q9NTX7 359 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 MAP3K20Q9NYL2 800 aaKnown RBP17.64■□□□□ 0.41
UPF1-206ENST00000598471 A0A0G2JMZ2 1700 aa17.64■□□□□ 0.41
UPF1-206ENST00000598471 CFBP00751 764 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 TAL1P17542 331 aaPredicted RBP17.63■□□□□ 0.41
UPF1-206ENST00000598471 NASPP49321 788 aaPredicted RBP17.63■□□□□ 0.41
UPF1-206ENST00000598471 INHBEP58166 350 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 CEBPZQ03701 1054 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms