RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 BMP15O95972 392 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 GJA5P36382 358 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 NONOQ15233 471 aaKnown RBP eCLIP17.43■□□□□ 0.38
TRIM28-209ENST00000597423 SF3A1Q15459 793 aaKnown RBP17.43■□□□□ 0.38
TRIM28-209ENST00000597423 NPY5RQ15761 445 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 TREML2Q5T2D2 321 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 FAM173BQ6P4H8 233 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 PIK3AP1Q6ZUJ8 805 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 SAPCD2Q86UD0 394 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 CPXCR1Q8N123 301 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 TNFRSF25Q93038 417 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 ATG4CQ96DT6 458 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 SPATA32Q96LK8 384 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 CNPY2Q9Y2B0 182 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 BAZ2BQ9UIF8 2168 aaKnown RBP17.42■□□□□ 0.38
TRIM28-209ENST00000597423 CCL15-CCL14A0A0B4J2E2 113 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 GOLGA6L4A6NEF3 574 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 MANSC4A6NHS7 340 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-209ENST00000597423 GCOM1H8Y6P7 765 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-209ENST00000597423 M0R2N6 131 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 YEATS4O95619 227 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 POLR2MP0CAP2 368 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 INHBEP58166 350 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 AP3B2Q13367 1082 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 CCL15Q16663 113 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 ANO1Q5XXA6 986 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 LBX2Q6XYB7 198 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 ANKRD23Q86SG2 305 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 JMYQ8N9B5 988 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 HHIPL1Q96JK4 782 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 AGBL1Q96MI9 1066 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 NAP1L4Q99733 375 aaKnown RBP17.42■□□□□ 0.38
TRIM28-209ENST00000597423 TEX13BQ9BXU2 312 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 EHMT1Q9H9B1 1298 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 RAVER2Q9HCJ3 691 aaKnown RBP17.42■□□□□ 0.38
TRIM28-209ENST00000597423 POLR3EQ9NVU0 708 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 BIN2Q9UBW5 565 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-209ENST00000597423 ABT1Q9ULW3 272 aaKnown RBP17.42■□□□□ 0.38
TRIM28-209ENST00000597423 TLL2Q9Y6L7 1015 aa17.42■□□□□ 0.38
TRIM28-209ENST00000597423 SPDYE3A6NKU9 549 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 SPDYE16A6NNV3 312 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-209ENST00000597423 PIK3CDO00329 1044 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 FIBPO43427 364 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 PRPF40AO75400 957 aaKnown RBP17.41■□□□□ 0.38
TRIM28-209ENST00000597423 ALAS1P13196 640 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 COPB2P35606 906 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 STAT3P40763 770 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 STK38Q15208 465 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 JAKMIP3Q5VZ66 844 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 KCNG4Q8TDN1 519 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 MS4A4AQ96JQ5 239 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 P2RX7Q99572 595 aaKnown RBP17.41■□□□□ 0.38
TRIM28-209ENST00000597423 ASCC2Q9H1I8 757 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-209ENST00000597423 RCOR1Q9UKL0 485 aa17.41■□□□□ 0.38
TRIM28-209ENST00000597423 HERVK_113P62684 666 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 MOGSQ13724 837 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 SKOR2Q2VWA4 1001 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-209ENST00000597423 GPAT2Q6NUI2 795 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 TMEM87AQ8NBN3 555 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 LEO1Q8WVC0 666 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-209ENST00000597423 TRERF1Q96PN7 1200 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 USP28Q96RU2 1077 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 RABGAP1Q9Y3P9 1069 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 MYH6P13533 1939 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 ZNF536O15090 1300 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 ELP1O95163 1332 aa17.4■□□□□ 0.38
TRIM28-209ENST00000597423 ATP2B1P20020 1258 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 NASPP49321 788 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 CLK2P49760 499 aaKnown RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 CEBPZQ03701 1054 aaKnown RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 MKRN3Q13064 507 aaKnown RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 ORC2Q13416 577 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 PLS1Q14651 629 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 TMEM132BQ14DG7 1078 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 TTC38Q5R3I4 469 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 SNRNP48Q6IEG0 339 aaKnown RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 RASAL3Q86YV0 1011 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 ZNF784Q8NCA9 323 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 REPS2Q8NFH8 660 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 ZCCHC17Q9NP64 241 aaKnown RBP17.39■□□□□ 0.37
TRIM28-209ENST00000597423 FBXO40Q9UH90 709 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 PHIPQ8WWQ0 1821 aa17.39■□□□□ 0.37
TRIM28-209ENST00000597423 TESPA1A2RU30 521 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-209ENST00000597423 PDHXO00330 501 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 MEIS2O14770 477 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 SPTLC2O15270 562 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 SLC25A27O95847 323 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 CFBP00751 764 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 GCLCP48506 637 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-209ENST00000597423 TOB1P50616 345 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-209ENST00000597423 USP11P51784 963 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 SLC39A14Q15043 492 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 UBE2SQ16763 222 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 USP17L6PQ6QN14 398 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 NEK8Q86SG6 692 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 LINC00301Q8NCQ3 95 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 CHST13Q8NET6 341 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 RASGRP4Q8TDF6 673 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 CLIC4Q9Y696 253 aa17.38■□□□□ 0.37
TRIM28-209ENST00000597423 OTOFQ9HC10 1997 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms