RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 NCAPHQ15003 741 aa9.27□□□□□ -0.93
SMG1-204ENST00000561940 LILRA2Q8N149 483 aa9.27□□□□□ -0.93
SMG1-204ENST00000561940 TMEM52Q8NDY8 209 aa9.27□□□□□ -0.93
SMG1-204ENST00000561940 MCMBPQ9BTE3 642 aa9.27□□□□□ -0.93
SMG1-204ENST00000561940 NSUN3Q9H649 340 aaKnown RBP9.27□□□□□ -0.93
SMG1-204ENST00000561940 FADS2P1A8MWK0 482 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 NR0B2Q15466 257 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 LCE3BQ5TA77 95 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 EEPD1Q7L9B9 569 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 PLCD4Q9BRC7 762 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 FAM53CQ9NYF3 392 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 TNFRSF10DQ9UBN6 386 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 CGGBP1Q9UFW8 167 aaPredicted RBP9.26□□□□□ -0.93
SMG1-204ENST00000561940 AKT3Q9Y243 479 aa9.26□□□□□ -0.93
SMG1-204ENST00000561940 STXBP3O00186 592 aa9.25□□□□□ -0.93
SMG1-204ENST00000561940 KIR2DL1P43626 348 aaPredicted RBP9.25□□□□□ -0.93
SMG1-204ENST00000561940 KIR2DL2P43627 348 aaPredicted RBP9.25□□□□□ -0.93
SMG1-204ENST00000561940 SLC10A6Q3KNW5 377 aa9.25□□□□□ -0.93
SMG1-204ENST00000561940 EGFLAMQ63HQ2 1017 aa9.25□□□□□ -0.93
SMG1-204ENST00000561940 ARHGEF39Q8N4T4 335 aa9.25□□□□□ -0.93
SMG1-204ENST00000561940 SHISA4Q96DD7 197 aa9.25□□□□□ -0.93
SMG1-204ENST00000561940 KRTAP4-12Q9BQ66 201 aa9.25□□□□□ -0.93
SMG1-204ENST00000561940 KDM2BQ8NHM5 1336 aa9.25□□□□□ -0.93
SMG1-204ENST00000561940 NRDCO43847 1150 aa9.24□□□□□ -0.93
SMG1-204ENST00000561940 KCNH1O95259 989 aa9.24□□□□□ -0.93
SMG1-204ENST00000561940 SDHBP21912 280 aa9.24□□□□□ -0.93
SMG1-204ENST00000561940 PDE6BP35913 854 aa9.24□□□□□ -0.93
SMG1-204ENST00000561940 CEBPAP49715 358 aaPredicted RBP9.24□□□□□ -0.93
SMG1-204ENST00000561940 SQSTM1Q13501 440 aa9.24□□□□□ -0.93
SMG1-204ENST00000561940 HSF5Q4G112 596 aaPredicted RBP9.24□□□□□ -0.93
SMG1-204ENST00000561940 ZNF513Q8N8E2 541 aaPredicted RBP9.24□□□□□ -0.93
SMG1-204ENST00000561940 ST13P5Q8NFI4 369 aaPredicted RBP9.24□□□□□ -0.93
SMG1-204ENST00000561940 ESYT3A0FGR9 886 aa9.23□□□□□ -0.93
SMG1-204ENST00000561940 SSRP1Q08945 709 aaKnown RBP9.23□□□□□ -0.93
SMG1-204ENST00000561940 SV2CQ496J9 727 aa9.23□□□□□ -0.93
SMG1-204ENST00000561940 NLRX1Q86UT6 975 aa9.23□□□□□ -0.93
SMG1-204ENST00000561940 JMJD8Q96S16 334 aa9.23□□□□□ -0.93
SMG1-204ENST00000561940 YBX2Q9Y2T7 364 aaKnown RBP9.23□□□□□ -0.93
SMG1-204ENST00000561940 ENPP3O14638 875 aa9.22□□□□□ -0.93
SMG1-204ENST00000561940 FGF10O15520 208 aaPredicted RBP9.22□□□□□ -0.93
SMG1-204ENST00000561940 FARP2O94887 1054 aaPredicted RBP9.22□□□□□ -0.93
SMG1-204ENST00000561940 ENDOUP21128 410 aaKnown RBP9.22□□□□□ -0.93
SMG1-204ENST00000561940 AMPD2Q01433 879 aa9.22□□□□□ -0.93
SMG1-204ENST00000561940 SNX17Q15036 470 aa9.22□□□□□ -0.93
SMG1-204ENST00000561940 BVESQ8NE79 360 aa9.22□□□□□ -0.93
SMG1-204ENST00000561940 INTS4Q96HW7 963 aaKnown RBP9.22□□□□□ -0.93
SMG1-204ENST00000561940 RCC1LQ96I51 464 aaKnown RBP9.22□□□□□ -0.93
SMG1-204ENST00000561940 CWC22Q9HCG8 908 aaKnown RBP9.22□□□□□ -0.93
SMG1-204ENST00000561940 FANCLQ9NW38 375 aa9.22□□□□□ -0.93
SMG1-204ENST00000561940 TAF6LQ9Y6J9 622 aa9.22□□□□□ -0.93
SMG1-204ENST00000561940 NOP56O00567 594 aaKnown RBP9.21□□□□□ -0.94
SMG1-204ENST00000561940 AURKAO14965 403 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 PRKCAP17252 672 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 C2orf27AQ580R0 203 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 ADGRF1Q5T601 910 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 SLCO6A1Q86UG4 719 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 JAMLQ86YT9 394 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 NUP43Q8NFH3 380 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 DCP1AQ9NPI6 582 aaPredicted RBP9.21□□□□□ -0.94
SMG1-204ENST00000561940 LRP2BPQ9P2M1 347 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.21□□□□□ -0.94
SMG1-204ENST00000561940 SBNO2Q9Y2G9 1366 aa9.21□□□□□ -0.94
SMG1-204ENST00000561940 C2orf71A6NGG8 1288 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 WTIPA6NIX2 430 aaPredicted RBP9.2□□□□□ -0.94
SMG1-204ENST00000561940 CANXP27824 592 aaKnown RBP9.2□□□□□ -0.94
SMG1-204ENST00000561940 ZNF124Q15973 351 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 HLA-DQA1Q5Y7H0 255 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 GALNT18Q6P9A2 607 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 POU5F2Q8N7G0 328 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 PTCHD1Q96NR3 888 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 SLC6A17Q9H1V8 727 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 IMPACTQ9P2X3 320 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 EMC9Q9Y3B6 208 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 PTCH2Q9Y6C5 1203 aa9.2□□□□□ -0.94
SMG1-204ENST00000561940 A0A1W2PQ27 194 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 A0A1W2PQ45 241 aaPredicted RBP9.19□□□□□ -0.94
SMG1-204ENST00000561940 A0A1W2PQ64 194 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 A0A1W2PQC6 194 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 A0A1W2PQD8 194 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 A0A1W2PQY0 241 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 FAM153BP0C7A2 387 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 NAT2P11245 290 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 HSD3B2P26439 372 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 SEPHS1P49903 392 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 MESP2Q0VG99 397 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 ZNF605Q86T29 641 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 JMYQ8N9B5 988 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 THAP3Q8WTV1 239 aaPredicted RBP9.19□□□□□ -0.94
SMG1-204ENST00000561940 EPB41L4BQ9H329 900 aa9.19□□□□□ -0.94
SMG1-204ENST00000561940 TBX1O43435 398 aa9.18□□□□□ -0.94
SMG1-204ENST00000561940 ADCY3O60266 1144 aa9.18□□□□□ -0.94
SMG1-204ENST00000561940 CDC45O75419 566 aa9.18□□□□□ -0.94
SMG1-204ENST00000561940 ZNF143P52747 638 aaPredicted RBP9.18□□□□□ -0.94
SMG1-204ENST00000561940 SYDE1Q6ZW31 735 aaPredicted RBP9.18□□□□□ -0.94
SMG1-204ENST00000561940 CPNE8Q86YQ8 564 aa9.18□□□□□ -0.94
SMG1-204ENST00000561940 KSR1Q8IVT5 923 aa9.18□□□□□ -0.94
SMG1-204ENST00000561940 ZNF669Q96BR6 464 aaPredicted RBP9.18□□□□□ -0.94
SMG1-204ENST00000561940 SPATA9Q9BWV2 254 aa9.18□□□□□ -0.94
SMG1-204ENST00000561940 GPRC5CQ9NQ84 441 aa9.18□□□□□ -0.94
SMG1-204ENST00000561940 TMEM260Q9NX78 707 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms