RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PABPC1P11940 636 aaKnown RBP10.32□□□□□ -0.76
LSM1-202ENST00000520286 SUMO1P63165 101 aaKnown RBP10.32□□□□□ -0.76
LSM1-202ENST00000520286 NSMFQ6X4W1 530 aa10.32□□□□□ -0.76
LSM1-202ENST00000520286 ADCY4Q8NFM4 1077 aa10.32□□□□□ -0.76
LSM1-202ENST00000520286 CHAC2Q8WUX2 184 aa10.32□□□□□ -0.76
LSM1-202ENST00000520286 RNF141Q8WVD5 230 aa10.32□□□□□ -0.76
LSM1-202ENST00000520286 RCC1LQ96I51 464 aaKnown RBP10.32□□□□□ -0.76
LSM1-202ENST00000520286 ASPNQ9BXN1 380 aa10.32□□□□□ -0.76
LSM1-202ENST00000520286 PCDHB12Q9Y5F1 795 aa10.32□□□□□ -0.76
LSM1-202ENST00000520286 MARCH6O60337 910 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 CAPNS1P04632 268 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 NFICP08651 508 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 Q6ZS46 218 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 CRACR2BQ8N4Y2 399 aaPredicted RBP10.31□□□□□ -0.76
LSM1-202ENST00000520286 FBLIM1Q8WUP2 373 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 LENG1Q96BZ8 264 aaPredicted RBP10.31□□□□□ -0.76
LSM1-202ENST00000520286 MRGPRX3Q96LB0 322 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 FBXL18Q96ME1 805 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 CLUHP3Q96NS8 147 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 MRPL4Q9BYD3 311 aaKnown RBP10.31□□□□□ -0.76
LSM1-202ENST00000520286 KLHL42Q9P2K6 505 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 EMC9Q9Y3B6 208 aa10.31□□□□□ -0.76
LSM1-202ENST00000520286 A0A087X0B3 334 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 STAT3P40763 770 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 NOL9Q5SY16 702 aaKnown RBP10.3□□□□□ -0.76
LSM1-202ENST00000520286 POMZP3Q6PJE2 187 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 TRIM59Q8IWR1 403 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 ARHGEF39Q8N4T4 335 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 OSBP2Q969R2 916 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 PSMG3-AS1Q96PY0 264 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 IER2Q9BTL4 223 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 PRDM10Q9NQV6 1147 aa10.3□□□□□ -0.76
LSM1-202ENST00000520286 DNAJC25-GNG10A0A024R161 153 aa10.29□□□□□ -0.76
LSM1-202ENST00000520286 PDE8AO60658 829 aa10.29□□□□□ -0.76
LSM1-202ENST00000520286 NBPF9Q3BBW0 867 aa10.29□□□□□ -0.76
LSM1-202ENST00000520286 SGO2Q562F6 1265 aa10.29□□□□□ -0.76
LSM1-202ENST00000520286 STAG1Q8WVM7 1258 aa10.29□□□□□ -0.76
LSM1-202ENST00000520286 EZH1Q92800 747 aaPredicted RBP10.29□□□□□ -0.76
LSM1-202ENST00000520286 FAM46AQ96IP4 442 aaKnown RBP10.29□□□□□ -0.76
LSM1-202ENST00000520286 UBL7Q96S82 380 aaPredicted RBP10.29□□□□□ -0.76
LSM1-202ENST00000520286 CAAP1Q9H8G2 361 aa10.29□□□□□ -0.76
LSM1-202ENST00000520286 CGGBP1Q9UFW8 167 aaPredicted RBP10.29□□□□□ -0.76
LSM1-202ENST00000520286 A0A087WZG4 1122 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 DYNC1LI2O43237 492 aaPredicted RBP10.28□□□□□ -0.76
LSM1-202ENST00000520286 SPATA31C1P0DKV0 1188 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 ZNF445P59923 1031 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 MAP7Q14244 749 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 PLEKHG6Q3KR16 790 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.28□□□□□ -0.76
LSM1-202ENST00000520286 PODNQ7Z5L7 613 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 BTN2A2Q8WVV5 523 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 BRF1Q92994 677 aa10.28□□□□□ -0.76
LSM1-202ENST00000520286 KCNH1O95259 989 aa10.27□□□□□ -0.77
LSM1-202ENST00000520286 SOX5P35711 763 aa10.27□□□□□ -0.77
LSM1-202ENST00000520286 CT47A1Q5JQC4 288 aaPredicted RBP10.27□□□□□ -0.77
LSM1-202ENST00000520286 NOL6Q9H6R4 1146 aaKnown RBP10.27□□□□□ -0.77
LSM1-202ENST00000520286 SFMBT1Q9UHJ3 866 aa10.27□□□□□ -0.77
LSM1-202ENST00000520286 FHOD1Q9Y613 1164 aa10.27□□□□□ -0.77
LSM1-202ENST00000520286 C9orf172C9J069 976 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 RXRBP28702 533 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 NOS3P29474 1203 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 IREB2P48200 963 aaKnown RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 NRG1Q02297 640 aaPredicted RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 CDK5R2Q13319 367 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 PPP2R5DQ14738 602 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 UVSSAQ2YD98 709 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 GTF2IRD2BQ6EKJ0 949 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 GTF2IRD2Q86UP8 949 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 JAMLQ86YT9 394 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 SYTL5Q8TDW5 730 aaPredicted RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 WFDC12Q8WWY7 111 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 FAM126AQ9BYI3 521 aaPredicted RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 PRDM14Q9GZV8 571 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 IRF2BPLQ9H1B7 796 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 TYW1Q9NV66 732 aaKnown RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 MAGEC2Q9UBF1 373 aaPredicted RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 TPX2Q9ULW0 747 aaKnown RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 DIS3Q9Y2L1 958 aaKnown RBP10.26□□□□□ -0.77
LSM1-202ENST00000520286 ATP8A1Q9Y2Q0 1164 aa10.26□□□□□ -0.77
LSM1-202ENST00000520286 KCNQ2O43526 872 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 DLX3O60479 287 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 APBA3O96018 575 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 PDGFRBP09619 1106 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 SDSP20132 328 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 CYP7A1P22680 504 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 SNW1Q13573 536 aaKnown RBP10.25□□□□□ -0.77
LSM1-202ENST00000520286 TRIM61Q5EBN2 209 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 LCE2AQ5TA79 106 aaPredicted RBP10.25□□□□□ -0.77
LSM1-202ENST00000520286 CNNM4Q6P4Q7 775 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 SEZ6L2Q6UXD5 910 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 RNF180Q86T96 592 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 FIBCD1Q8N539 461 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 TOP6BLQ8N6T0 577 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 BEND7Q8N7W2 519 aaPredicted RBP10.25□□□□□ -0.77
LSM1-202ENST00000520286 UBR7Q8N806 425 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 NACC1Q96RE7 527 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 TARS2Q9BW92 718 aaKnown RBP10.25□□□□□ -0.77
LSM1-202ENST00000520286 INTS7Q9NVH2 962 aaKnown RBP10.25□□□□□ -0.77
LSM1-202ENST00000520286 CNTNAP5Q8WYK1 1306 aa10.25□□□□□ -0.77
LSM1-202ENST00000520286 GSG1L2A8MUP6 293 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms