RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 CEP131Q9UPN4 1083 aa6.5□□□□□ -1.37
VPS13A-213ENST00000539950 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-213ENST00000539950 BPNT1O95861 308 aa6.49□□□□□ -1.37
VPS13A-213ENST00000539950 GBP2P32456 591 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-213ENST00000539950 AFMP43652 599 aa6.49□□□□□ -1.37
VPS13A-213ENST00000539950 FAM160A1Q05DH4 1040 aa6.49□□□□□ -1.37
VPS13A-213ENST00000539950 FZD5Q13467 585 aa6.49□□□□□ -1.37
VPS13A-213ENST00000539950 ZNF124Q15973 351 aa6.49□□□□□ -1.37
VPS13A-213ENST00000539950 TMEM201Q5SNT2 666 aa6.49□□□□□ -1.37
VPS13A-213ENST00000539950 FAM13CQ8NE31 585 aa6.49□□□□□ -1.37
VPS13A-213ENST00000539950 PIWIL2Q8TC59 973 aaKnown RBP6.49□□□□□ -1.37
VPS13A-213ENST00000539950 POLR3KQ9Y2Y1 108 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-213ENST00000539950 LRRC10BA6NIK2 292 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 MINDY4BA8MYZ0 360 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 GRIN3BO60391 1043 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 FARP2O94887 1054 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-213ENST00000539950 ESR1P03372 595 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 GDNFP39905 211 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 RELL1Q8IUW5 271 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 CYB5D2Q8WUJ1 264 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 LIN37Q96GY3 246 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-213ENST00000539950 RSRP1Q9BUV0 290 aa6.48□□□□□ -1.37
VPS13A-213ENST00000539950 DUSP15Q9H1R2 295 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-213ENST00000539950 MESP2Q0VG99 397 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 TMPRSS7Q7RTY8 843 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 SLFN12Q8IYM2 578 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 GOLM1Q8NBJ4 401 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 FBXO27Q8NI29 283 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 KIRREL1Q96J84 757 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 ALPK1Q96QP1 1244 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 SLAMF8Q9P0V8 285 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 REV1Q9UBZ9 1251 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 PRR36Q9H6K5 1346 aa6.47□□□□□ -1.37
VPS13A-213ENST00000539950 DNAJC25-GNG10A0A024R161 153 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 DNAJA2O60884 412 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 ERCC3P19447 782 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 GARTP22102 1010 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 TPP2P29144 1249 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-213ENST00000539950 YARSP54577 528 aaKnown RBP6.46□□□□□ -1.38
VPS13A-213ENST00000539950 MLANAQ16655 118 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 RALGPS1Q5JS13 557 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 SNAP47Q5SQN1 464 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 DIEXFQ68CQ4 756 aaKnown RBP6.46□□□□□ -1.38
VPS13A-213ENST00000539950 DTWD2Q8NBA8 298 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 COPRSQ9NQ92 184 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 KBTBD4Q9NVX7 518 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 KLHL3Q9UH77 587 aa6.46□□□□□ -1.38
VPS13A-213ENST00000539950 CHURC1-FNTBB4DL54 471 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 LRRN2O75325 713 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 HTR3BO95264 441 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 GLI1P08151 1106 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 SRFP11831 508 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 PWP1Q13610 501 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 GAB4Q2WGN9 574 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 ERMP1Q7Z2K6 904 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 TTC6Q86TZ1 520 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 CREG2Q8IUH2 290 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 KSR1Q8IVT5 923 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 BAHD1Q8TBE0 780 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-213ENST00000539950 FAM53CQ9NYF3 392 aa6.45□□□□□ -1.38
VPS13A-213ENST00000539950 ERVFC1P60507 584 aa6.44□□□□□ -1.38
VPS13A-213ENST00000539950 MPP2Q14168 576 aa6.44□□□□□ -1.38
VPS13A-213ENST00000539950 TMEM67Q5HYA8 995 aa6.44□□□□□ -1.38
VPS13A-213ENST00000539950 PRR23BQ6ZRT6 265 aa6.44□□□□□ -1.38
VPS13A-213ENST00000539950 REC114Q7Z4M0 266 aa6.44□□□□□ -1.38
VPS13A-213ENST00000539950 GPR62Q9BZJ7 368 aa6.44□□□□□ -1.38
VPS13A-213ENST00000539950 TLR3O15455 904 aaKnown RBP6.43□□□□□ -1.38
VPS13A-213ENST00000539950 FBXL19Q6PCT2 694 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 MPZL3Q6UWV2 235 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 FAM196AQ6ZSG2 479 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 RNF141Q8WVD5 230 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 BCL2L13Q9BXK5 485 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 ADAMTS10Q9H324 1103 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 TRIT1Q9H3H1 467 aaKnown RBP6.43□□□□□ -1.38
VPS13A-213ENST00000539950 GPATCH2Q9NW75 528 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 TMEM59LQ9UK28 342 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 KCNH3Q9ULD8 1083 aa6.43□□□□□ -1.38
VPS13A-213ENST00000539950 DBX1A6NMT0 343 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 TNNI2P48788 182 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 HK2P52789 917 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 PKN1Q16512 942 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 TSPYL5Q86VY4 417 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-213ENST00000539950 GIPC2Q8TF65 315 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 CCDC120Q96HB5 630 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 FAM84AQ96KN4 292 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 KREMEN1Q96MU8 473 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 SLC38A3Q99624 504 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 KIF2CQ99661 725 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 DUSP13Q9UII6 198 aa6.42□□□□□ -1.38
VPS13A-213ENST00000539950 GREM1O60565 184 aa6.41□□□□□ -1.38
VPS13A-213ENST00000539950 EGR3Q06889 387 aa6.41□□□□□ -1.38
VPS13A-213ENST00000539950 ABHD4Q8TB40 342 aa6.41□□□□□ -1.38
VPS13A-213ENST00000539950 CCDC74BQ96LY2 380 aa6.41□□□□□ -1.38
VPS13A-213ENST00000539950 BRMS1Q9HCU9 246 aa6.41□□□□□ -1.38
VPS13A-213ENST00000539950 KCNQ5Q9NR82 932 aa6.41□□□□□ -1.38
VPS13A-213ENST00000539950 SHISA3A0PJX4 238 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 ITGAEP38570 1179 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 EIF4A3P38919 411 aaKnown RBP6.4□□□□□ -1.38
VPS13A-213ENST00000539950 CRKP46108 304 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 MRPL58Q14197 206 aaKnown RBP6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms