RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Lce3eF8VQJ0 98 aa4.22□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Lce3fQ6PAI4 98 aa4.22□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Lce3dE9Q8V1 98 aa4.22□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Lce1lQ9D1G7 135 aa4.18□□□□□ -1.74
Clcn3-201ENSMUST00000004430 Krtap4-9B1AQA9 244 aa4.18□□□□□ -1.74
Clcn3-201ENSMUST00000004430 Gm11938Q9D3H4 131 aa4.13□□□□□ -1.75
Clcn3-201ENSMUST00000004430 Krtap4-7Q9D732 168 aa4.13□□□□□ -1.75
Clcn3-201ENSMUST00000004430 Sprr2iO70560 76 aa4.08□□□□□ -1.76
Clcn3-201ENSMUST00000004430 Lce1eQ9D139 143 aa4.07□□□□□ -1.76
Clcn3-201ENSMUST00000004430 Lce3aQ497I5 98 aa4.06□□□□□ -1.76
Clcn3-201ENSMUST00000004430 Krtap4-13Q9D7P3 165 aa4.05□□□□□ -1.76
Clcn3-201ENSMUST00000004430 Lce1cQ9D1C5 147 aa4.03□□□□□ -1.76
Clcn3-201ENSMUST00000004430 Gm11555B1AQ89 175 aa4.01□□□□□ -1.77
Clcn3-201ENSMUST00000004430 Sprr2dO70555 85 aa3.99□□□□□ -1.77
Clcn3-201ENSMUST00000004430 2300003K06RikA2A4M0 262 aa3.99□□□□□ -1.77
Clcn3-201ENSMUST00000004430 Krtap19-4Q925H7 84 aa3.98□□□□□ -1.77
Clcn3-201ENSMUST00000004430 Lce1bQ9D149 137 aa3.95□□□□□ -1.78
Clcn3-201ENSMUST00000004430 Lce1fB9EJP6 147 aa3.89□□□□□ -1.79
Clcn3-201ENSMUST00000004430 Lce1a1Q9CQH5 143 aa3.87□□□□□ -1.79
Clcn3-201ENSMUST00000004430 Krtap6-3A0A087WQL6 57 aa3.86□□□□□ -1.79
Clcn3-201ENSMUST00000004430 Krtap31-1Q9D644 177 aa3.84□□□□□ -1.8
Clcn3-201ENSMUST00000004430 Macf1Q9QXZ0 7354 aaKnown RBP3.82□□□□□ -1.8
Clcn3-201ENSMUST00000004430 ObscnA2AAJ9 8891 aaKnown RBP3.81□□□□□ -1.8
Clcn3-201ENSMUST00000004430 Krtap4-16Q91W93 202 aa3.8□□□□□ -1.8
Clcn3-201ENSMUST00000004430 Sprr2fO70557 76 aa3.77□□□□□ -1.81
Clcn3-201ENSMUST00000004430 Gm10024A0A0A0MQA4 119 aa3.74□□□□□ -1.81
Clcn3-201ENSMUST00000004430 Sprr2hO70559 108 aa3.66□□□□□ -1.82
Clcn3-201ENSMUST00000004430 Lce1kJ3QP15 125 aa3.63□□□□□ -1.83
Clcn3-201ENSMUST00000004430 Eppk1Q8R0W0 6548 aa3.57□□□□□ -1.84
Clcn3-201ENSMUST00000004430 Sprr2eO70556 76 aa3.55□□□□□ -1.84
Clcn3-201ENSMUST00000004430 Gm11554B1AQB2 190 aa3.54□□□□□ -1.84
Clcn3-201ENSMUST00000004430 Krtap20-2E9Q0A8 60 aa3.49□□□□□ -1.85
Clcn3-201ENSMUST00000004430 DstQ91ZU6 7393 aaKnown RBP3.48□□□□□ -1.85
Clcn3-201ENSMUST00000004430 Muc19Q6PZE0 7524 aa3.45□□□□□ -1.86
Clcn3-201ENSMUST00000004430 Krtap31-2Q8CAY5 177 aa3.42□□□□□ -1.86
Clcn3-201ENSMUST00000004430 NebE9Q1W3 7152 aa3.39□□□□□ -1.87
Clcn3-201ENSMUST00000004430 Mt1P02802 61 aaKnown RBP3.37□□□□□ -1.87
Clcn3-201ENSMUST00000004430 Mt3P28184 68 aa3.25□□□□□ -1.89
Clcn3-201ENSMUST00000004430 Gm11568A2A4M2 211 aa3.2□□□□□ -1.9
Clcn3-201ENSMUST00000004430 Krtap9-1Q64526 186 aa3.2□□□□□ -1.9
Clcn3-201ENSMUST00000004430 Gpr98Q8VHN7 6298 aaKnown RBP3.19□□□□□ -1.9
Clcn3-201ENSMUST00000004430 Gm11639A0A1D5RLM8 5808 aa3.13□□□□□ -1.91
Clcn3-201ENSMUST00000004430 Kmt2dQ6PDK2 5588 aa3.13□□□□□ -1.91
Clcn3-201ENSMUST00000004430 A0A1Y7VJH8 109 aa3.08□□□□□ -1.92
Clcn3-201ENSMUST00000004430 Krtap5-2Q9D5Z7 189 aa3.05□□□□□ -1.92
Clcn3-201ENSMUST00000004430 Gm11559Q9D3H7 191 aa3.02□□□□□ -1.93
Clcn3-201ENSMUST00000004430 Gm10153A0A1B0GRL1 320 aa2.93□□□□□ -1.94
Clcn3-201ENSMUST00000004430 Hmcn1D3YXG0 5634 aa2.86□□□□□ -1.95
Clcn3-201ENSMUST00000004430 A0A1Y7VLE6 161 aa2.8□□□□□ -1.96
Clcn3-201ENSMUST00000004430 Gm4553A0A1B0GSA9 284 aa2.79□□□□□ -1.96
Clcn3-201ENSMUST00000004430 Gm45337A0A1B0GS71 263 aa2.74□□□□□ -1.97
Clcn3-201ENSMUST00000004430 Sprr2bO70554 98 aa2.74□□□□□ -1.97
Clcn3-201ENSMUST00000004430 Gm2431E9Q8S1 172 aa2.73□□□□□ -1.97
Clcn3-201ENSMUST00000004430 A030005L19RikA0A1Y7VIU2 113 aa2.69□□□□□ -1.98
Clcn3-201ENSMUST00000004430 Gm40460A0A1B0GR10 244 aa2.66□□□□□ -1.98
Clcn3-201ENSMUST00000004430 Gm7579A0A1B0GRJ4 243 aa2.66□□□□□ -1.98
Clcn3-201ENSMUST00000004430 Krtap5-5Q2TA51 241 aa2.66□□□□□ -1.98
Clcn3-201ENSMUST00000004430 Krtap5-4Q62220 223 aa2.66□□□□□ -1.98
Clcn3-201ENSMUST00000004430 1110025L11RikO09048 78 aa2.64□□□□□ -1.99
Clcn3-201ENSMUST00000004430 Krtap6-5Q925H3 78 aa2.64□□□□□ -1.99
Clcn3-201ENSMUST00000004430 A030005K14RikA0A1Y7VNY1 122 aa2.54□□□□□ -2
Clcn3-201ENSMUST00000004430 AhnakE9Q616 5656 aaKnown RBP2.48□□□□□ -2.01
Clcn3-201ENSMUST00000004430 Krtap28-13A0A087WQP5 138 aa2.48□□□□□ -2.01
Clcn3-201ENSMUST00000004430 Gm39115A0A1B0GSH7 232 aa2.43□□□□□ -2.02
Clcn3-201ENSMUST00000004430 A030014E15RikA0A1Y7VJV2 120 aa2.41□□□□□ -2.02
Clcn3-201ENSMUST00000004430 Gm10229O08631 77 aa2.4□□□□□ -2.02
Clcn3-201ENSMUST00000004430 Phgr1Q8K0G7 91 aa2.4□□□□□ -2.02
Clcn3-201ENSMUST00000004430 Krtap28-10A0A1Y7VP58 119 aa2.4□□□□□ -2.03
Clcn3-201ENSMUST00000004430 A0A1Y7VJ07 166 aa2.37□□□□□ -2.03
Clcn3-201ENSMUST00000004430 A030003K21RikA0A1Y7VIM3 128 aa2.35□□□□□ -2.03
Clcn3-201ENSMUST00000004430 Gm7544A0A1Y7VJ58 118 aa2.22□□□□□ -2.05
Clcn3-201ENSMUST00000004430 Gm6217A0A1Y7VJK9 128 aa2.19□□□□□ -2.06
Clcn3-201ENSMUST00000004430 Gm11567Q9D141 195 aa2.14□□□□□ -2.07
Clcn3-201ENSMUST00000004430 Krtap21-1Q925H4 128 aa2.1□□□□□ -2.07
Clcn3-201ENSMUST00000004430 Gm45618A0A1B0GSA0 219 aa2.08□□□□□ -2.08
Clcn3-201ENSMUST00000004430 A0A286YCP9 139 aa2.05□□□□□ -2.08
Clcn3-201ENSMUST00000004430 Gm29735A0A1B0GT06 219 aa2.01□□□□□ -2.09
Clcn3-201ENSMUST00000004430 Krtap6-2O08884 159 aa1.98□□□□□ -2.09
Clcn3-201ENSMUST00000004430 Krtap5-1Q64507 230 aa1.47□□□□□ -2.17
Clcn3-201ENSMUST00000004430 Gm4559A4IF42 199 aa1.29□□□□□ -2.2
Retrieved 80 of 22,080 RNA–protein pairs in 135.5 ms