RNA–Protein interactions for RNA: ENSMUST00000003857.6

Shkbp1-201, Transcript of SH3KBP1-binding protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shkbp1, Length 2,358 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1-201ENSMUST00000003857 Lce3fQ6PAI4 98 aa5.59□□□□□ -1.51
Shkbp1-201ENSMUST00000003857 Sprr2eO70556 76 aa5.57□□□□□ -1.52
Shkbp1-201ENSMUST00000003857 ObscnA2AAJ9 8891 aaKnown RBP5.51□□□□□ -1.53
Shkbp1-201ENSMUST00000003857 2300003K06RikA2A4M0 262 aa5.5□□□□□ -1.53
Shkbp1-201ENSMUST00000003857 Krtap4-2B1AQ85 167 aa5.48□□□□□ -1.53
Shkbp1-201ENSMUST00000003857 Lce1gQ9D195 139 aa5.48□□□□□ -1.53
Shkbp1-201ENSMUST00000003857 Gm38119A0A0A6YX29 146 aa5.48□□□□□ -1.53
Shkbp1-201ENSMUST00000003857 Sprr2kO70562 68 aa5.45□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Lce1bQ9D149 137 aa5.45□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Mt4P47945 62 aa5.44□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Lce3aQ497I5 98 aa5.44□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Gm11564A2A4L9 201 aa5.43□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Gm11563B1AQ90 168 aa5.43□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Gm11595B1AQA7 289 aa5.43□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Krtap4-8B1AQA8 209 aa5.43□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Sprr2fO70557 76 aa5.42□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Gm11596B1AQB0 205 aa5.41□□□□□ -1.54
Shkbp1-201ENSMUST00000003857 Krtap31-1Q9D644 177 aa5.37□□□□□ -1.55
Shkbp1-201ENSMUST00000003857 Krtap4-9B1AQA9 244 aa5.33□□□□□ -1.56
Shkbp1-201ENSMUST00000003857 Fsip2A2ARZ3 6995 aa5.3□□□□□ -1.56
Shkbp1-201ENSMUST00000003857 Mt1P02802 61 aaKnown RBP5.29□□□□□ -1.56
Shkbp1-201ENSMUST00000003857 Syne2Q6ZWQ0 6874 aaKnown RBP5.28□□□□□ -1.56
Shkbp1-201ENSMUST00000003857 Lce1lQ9D1G7 135 aa5.2□□□□□ -1.58
Shkbp1-201ENSMUST00000003857 Lce1kJ3QP15 125 aa5.18□□□□□ -1.58
Shkbp1-201ENSMUST00000003857 Krtap4-13Q9D7P3 165 aa5.15□□□□□ -1.59
Shkbp1-201ENSMUST00000003857 Krtap31-2Q8CAY5 177 aa5.1□□□□□ -1.59
Shkbp1-201ENSMUST00000003857 Krtap4-16Q91W93 202 aa5.02□□□□□ -1.61
Shkbp1-201ENSMUST00000003857 Gm11568A2A4M2 211 aa5□□□□□ -1.61
Shkbp1-201ENSMUST00000003857 Krtap9-1Q64526 186 aa5□□□□□ -1.61
Shkbp1-201ENSMUST00000003857 Krtap4-7Q9D732 168 aa4.99□□□□□ -1.61
Shkbp1-201ENSMUST00000003857 A0A1Y7VJH8 109 aa4.98□□□□□ -1.61
Shkbp1-201ENSMUST00000003857 Krtap20-2E9Q0A8 60 aa4.84□□□□□ -1.64
Shkbp1-201ENSMUST00000003857 Krtap5-2Q9D5Z7 189 aa4.83□□□□□ -1.64
Shkbp1-201ENSMUST00000003857 Gm10024A0A0A0MQA4 119 aa4.76□□□□□ -1.65
Shkbp1-201ENSMUST00000003857 Gm10153A0A1B0GRL1 320 aa4.74□□□□□ -1.65
Shkbp1-201ENSMUST00000003857 Mt3P28184 68 aa4.63□□□□□ -1.67
Shkbp1-201ENSMUST00000003857 Krtap6-3A0A087WQL6 57 aa4.57□□□□□ -1.68
Shkbp1-201ENSMUST00000003857 Macf1Q9QXZ0 7354 aaKnown RBP4.45□□□□□ -1.7
Shkbp1-201ENSMUST00000003857 Gm45337A0A1B0GS71 263 aa4.41□□□□□ -1.7
Shkbp1-201ENSMUST00000003857 Gm4553A0A1B0GSA9 284 aa4.38□□□□□ -1.71
Shkbp1-201ENSMUST00000003857 Hmcn1D3YXG0 5634 aa4.36□□□□□ -1.71
Shkbp1-201ENSMUST00000003857 Muc16A0A140LJ72 8478 aa4.36□□□□□ -1.71
Shkbp1-201ENSMUST00000003857 Gm40460A0A1B0GR10 244 aa4.29□□□□□ -1.72
Shkbp1-201ENSMUST00000003857 Gm7579A0A1B0GRJ4 243 aa4.29□□□□□ -1.72
Shkbp1-201ENSMUST00000003857 Krtap5-5Q2TA51 241 aa4.29□□□□□ -1.72
Shkbp1-201ENSMUST00000003857 Krtap5-4Q62220 223 aa4.29□□□□□ -1.72
Shkbp1-201ENSMUST00000003857 Gm11559Q9D3H7 191 aa4.28□□□□□ -1.72
Shkbp1-201ENSMUST00000003857 Kmt2dQ6PDK2 5588 aa4.26□□□□□ -1.73
Shkbp1-201ENSMUST00000003857 Gm2431E9Q8S1 172 aa4.25□□□□□ -1.73
Shkbp1-201ENSMUST00000003857 A0A1Y7VJ07 166 aa4.2□□□□□ -1.74
Shkbp1-201ENSMUST00000003857 A0A286YCP9 139 aa4.16□□□□□ -1.74
Shkbp1-201ENSMUST00000003857 Gm11554B1AQB2 190 aa4.13□□□□□ -1.75
Shkbp1-201ENSMUST00000003857 1110025L11RikO09048 78 aa4.09□□□□□ -1.76
Shkbp1-201ENSMUST00000003857 Krtap6-5Q925H3 78 aa4.09□□□□□ -1.76
Shkbp1-201ENSMUST00000003857 Krtap28-13A0A087WQP5 138 aa3.97□□□□□ -1.77
Shkbp1-201ENSMUST00000003857 Muc19Q6PZE0 7524 aa3.89□□□□□ -1.79
Shkbp1-201ENSMUST00000003857 Gm39115A0A1B0GSH7 232 aa3.87□□□□□ -1.79
Shkbp1-201ENSMUST00000003857 A030005L19RikA0A1Y7VIU2 113 aa3.8□□□□□ -1.8
Shkbp1-201ENSMUST00000003857 Sprr2bO70554 98 aa3.8□□□□□ -1.8
Shkbp1-201ENSMUST00000003857 Eppk1Q8R0W0 6548 aa3.77□□□□□ -1.81
Shkbp1-201ENSMUST00000003857 DstQ91ZU6 7393 aaKnown RBP3.73□□□□□ -1.81
Shkbp1-201ENSMUST00000003857 Gm11639A0A1D5RLM8 5808 aa3.65□□□□□ -1.82
Shkbp1-201ENSMUST00000003857 Gm7544A0A1Y7VJ58 118 aa3.65□□□□□ -1.83
Shkbp1-201ENSMUST00000003857 AhnakE9Q616 5656 aaKnown RBP3.63□□□□□ -1.83
Shkbp1-201ENSMUST00000003857 Gm10229O08631 77 aa3.6□□□□□ -1.83
Shkbp1-201ENSMUST00000003857 A030003K21RikA0A1Y7VIM3 128 aa3.46□□□□□ -1.86
Shkbp1-201ENSMUST00000003857 Gm6217A0A1Y7VJK9 128 aa3.46□□□□□ -1.86
Shkbp1-201ENSMUST00000003857 A030005K14RikA0A1Y7VNY1 122 aa3.39□□□□□ -1.87
Shkbp1-201ENSMUST00000003857 Gm11567Q9D141 195 aa3.39□□□□□ -1.87
Shkbp1-201ENSMUST00000003857 Krtap21-1Q925H4 128 aa3.38□□□□□ -1.87
Shkbp1-201ENSMUST00000003857 Phgr1Q8K0G7 91 aa3.35□□□□□ -1.87
Shkbp1-201ENSMUST00000003857 Gpr98Q8VHN7 6298 aaKnown RBP3.31□□□□□ -1.88
Shkbp1-201ENSMUST00000003857 Gm29735A0A1B0GT06 219 aa3.27□□□□□ -1.89
Shkbp1-201ENSMUST00000003857 A030014E15RikA0A1Y7VJV2 120 aa3.22□□□□□ -1.89
Shkbp1-201ENSMUST00000003857 Krtap28-10A0A1Y7VP58 119 aa3.22□□□□□ -1.89
Shkbp1-201ENSMUST00000003857 Gm45618A0A1B0GSA0 219 aa3.21□□□□□ -1.9
Shkbp1-201ENSMUST00000003857 NebE9Q1W3 7152 aa3.2□□□□□ -1.9
Shkbp1-201ENSMUST00000003857 Krtap6-2O08884 159 aa3.01□□□□□ -1.93
Shkbp1-201ENSMUST00000003857 Krtap5-1Q64507 230 aa1.95□□□□□ -2.1
Shkbp1-201ENSMUST00000003857 Gm4559A4IF42 199 aa1.88□□□□□ -2.11
Retrieved 80 of 22,080 RNA–protein pairs in 99.9 ms