RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-204	ENST00000554660	IRX3	P78415	501 aa	Predicted RBP	13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	SH3D19	Q5HYK7	790 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	ZKSCAN2	Q63HK3	967 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	TEX11	Q8IYF3	940 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	SPATA5	Q8NB90	893 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	NEUROD6	Q96NK8	337 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	TXNRD2	Q9NNW7	524 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	RAI14	Q9P0K7	980 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	MORF4L1	Q9UBU8	362 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	UNC80	Q8N2C7	3258 aa		13.92	□□□□□ -0.18
VPS33B-204	ENST00000554660	IGHD	P01880	384 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	GSTO1	P78417	241 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	JAG1	P78504	1218 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	MAP3K21	Q5TCX8	1036 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	TDH	Q8IZJ6	230 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	TBC1D2	Q9BYX2	928 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	AS3MT	Q9HBK9	375 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	OGDHL	Q9ULD0	1010 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	AKAP2	Q9Y2D5	859 aa		13.91	□□□□□ -0.18
VPS33B-204	ENST00000554660	MCAM	P43121	646 aa		13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	LRIT3	Q3SXY7	679 aa		13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	SOCS4	Q8WXH5	440 aa		13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	API5	Q9BZZ5	524 aa	Known RBP	13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	UBE2O	Q9C0C9	1292 aa	Known RBP	13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	CHMP4B	Q9H444	224 aa	Known RBP	13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	DNAJC18	Q9H819	358 aa		13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	HERC5	Q9UII4	1024 aa	Known RBP	13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	COG6	Q9Y2V7	657 aa		13.9	□□□□□ -0.18
VPS33B-204	ENST00000554660	GDF11	O95390	407 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	LDHC	P07864	332 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	ZKSCAN1	P17029	563 aa	Predicted RBP	13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	ARID4A	P29374	1257 aa	Predicted RBP	13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	BACE1	P56817	501 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	HERVK_113	P62684	666 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	HDAC1	Q13547	482 aa	Predicted RBP	13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	CCL14	Q16627	93 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	GORAB	Q5T7V8	394 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	GPR153	Q6NV75	609 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	PANK1	Q8TE04	598 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	P2RX7	Q99572	595 aa	Known RBP	13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	NUDT12	Q9BQG2	462 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	TMOD4	Q9NZQ9	345 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	HDAC5	Q9UQL6	1122 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	STXBP5L	Q9Y2K9	1186 aa		13.89	□□□□□ -0.19
VPS33B-204	ENST00000554660	FRMPD3	Q5JV73	1810 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	MAP4K4	O95819	1239 aa	Predicted RBP	13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	CCND3	P30281	292 aa	Predicted RBP	13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	CACNB2	Q08289	660 aa	Predicted RBP	13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	BECN1	Q14457	450 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	LRRC26	Q2I0M4	334 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	MAPKAPK5	Q8IW41	473 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	GPRC5A	Q8NFJ5	357 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	PAGR1	Q9BTK6	254 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	WDR18	Q9BV38	432 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	PORCN	Q9H237	461 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	MTMR10	Q9NXD2	777 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	LRP2BP	Q9P2M1	347 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	PI4KB	Q9UBF8	816 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	DDX19B	Q9UMR2	479 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	CDK5RAP2	Q96SN8	1893 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	FLT1	P17948	1338 aa		13.88	□□□□□ -0.19
VPS33B-204	ENST00000554660	FOCAD	Q5VW36	1801 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	IPO8	O15397	1037 aa	Known RBP	13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	ASNS	P08243	561 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	COL6A1	P12109	1028 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	XRCC5	P13010	732 aa	Known RBP	13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	HOXA7	P31268	230 aa	Predicted RBP	13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	MDM2	Q00987	491 aa	Predicted RBP	13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	MTX1	Q13505	466 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	ADGRA1	Q86SQ6	560 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	TGFBRAP1	Q8WUH2	860 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	NOL10	Q9BSC4	688 aa	Known RBP	13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	UPF2	Q9HAU5	1272 aa	Known RBP	13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	SNRK	Q9NRH2	765 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	RBPJL	Q9UBG7	517 aa		13.87	□□□□□ -0.19
VPS33B-204	ENST00000554660	LAMA2	P24043	3122 aa	Known RBP	13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	CUL9	Q8IWT3	2517 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	ERVK-9	P63128	1117 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	ERVK-24	P63145	666 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660		Q3C1V9	767 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	NAA16	Q6N069	864 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	POTEE	Q6S8J3	1075 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	GPR142	Q7Z601	462 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	APBA2	Q99767	749 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	SAP30BP	Q9UHR5	308 aa	Known RBP	13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	PALD1	Q9ULE6	856 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	ZBTB21	Q9ULJ3	1066 aa		13.86	□□□□□ -0.19
VPS33B-204	ENST00000554660	EYS	Q5T1H1	3165 aa		13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	PNMA6E	A0A0J9YXQ4	647 aa		13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	USP17L10	C9JJH3	530 aa		13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	GNAI3	P08754	354 aa		13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	MAPK4	P31152	587 aa		13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	RGS2	P41220	211 aa		13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	ZYX	Q15942	572 aa	Known RBP	13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	LHX8	Q68G74	356 aa		13.85	□□□□□ -0.19
VPS33B-204	ENST00000554660	CCAR1	Q8IX12	1150 aa	Known RBP	13.85	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms