RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 JMJD7-PLA2G4BH0Y9G9 81 aa3.81□□□□□ -1.8
VPS39-209ENST00000568029 MT-ATP8P03928 68 aa3.81□□□□□ -1.8
VPS39-209ENST00000568029 TLX1NBP0CAT3 122 aa3.81□□□□□ -1.8
VPS39-209ENST00000568029 COX7BP24311 80 aa3.81□□□□□ -1.8
VPS39-209ENST00000568029 DIRC1Q969H9 104 aa3.81□□□□□ -1.8
VPS39-209ENST00000568029 APLNQ9ULZ1 77 aa3.81□□□□□ -1.8
VPS39-209ENST00000568029 LRP1Q07954 4544 aaKnown RBP3.81□□□□□ -1.8
VPS39-209ENST00000568029 TRBV10-3A0A0K0K1G6 114 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 C16orf90A8MZG2 172 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 UBE2DNLQ8IWF7 75 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 NKAPP1Q8N9T2 125 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 Q8NDZ9 215 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 OBSCN-AS1Q96MR7 158 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 OCR1Q9BZK8 76 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 C22orf24Q9Y442 160 aa3.8□□□□□ -1.8
VPS39-209ENST00000568029 FAT3Q8TDW7 4589 aa3.79□□□□□ -1.8
VPS39-209ENST00000568029 SRRM2Q9UQ35 2752 aaKnown RBP3.79□□□□□ -1.8
VPS39-209ENST00000568029 ZNF73O43830 326 aaPredicted RBP3.79□□□□□ -1.8
VPS39-209ENST00000568029 Q6Q795 121 aa3.79□□□□□ -1.8
VPS39-209ENST00000568029 LINC00643Q86TS7 51 aa3.79□□□□□ -1.8
VPS39-209ENST00000568029 LOC107984640A0A0U1RRK4 108 aa3.78□□□□□ -1.8
VPS39-209ENST00000568029 CCKP06307 115 aa3.78□□□□□ -1.8
VPS39-209ENST00000568029 PDE6GP18545 87 aa3.78□□□□□ -1.8
VPS39-209ENST00000568029 TTC32Q5I0X7 151 aa3.78□□□□□ -1.8
VPS39-209ENST00000568029 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.78□□□□□ -1.8
VPS39-209ENST00000568029 Q8N377 158 aa3.78□□□□□ -1.8
VPS39-209ENST00000568029 IMUPQ9GZP8 106 aa3.78□□□□□ -1.8
VPS39-209ENST00000568029 C14orf132Q9NPU4 83 aa3.78□□□□□ -1.8
VPS39-209ENST00000568029 FLG2Q5D862 2391 aaPredicted RBP3.78□□□□□ -1.8
VPS39-209ENST00000568029 A0A1B0GV72 72 aa3.77□□□□□ -1.81
VPS39-209ENST00000568029 PSCAO43653 123 aa3.77□□□□□ -1.81
VPS39-209ENST00000568029 ELOF1P60002 83 aaKnown RBP3.77□□□□□ -1.81
VPS39-209ENST00000568029 RBM3P98179 157 aaKnown RBP3.77□□□□□ -1.81
VPS39-209ENST00000568029 C9orf129Q5T035 196 aaKnown RBP3.77□□□□□ -1.81
VPS39-209ENST00000568029 LAMTOR3Q9UHA4 124 aa3.77□□□□□ -1.81
VPS39-209ENST00000568029 PKIGQ9Y2B9 76 aa3.77□□□□□ -1.81
VPS39-209ENST00000568029 NDUFV3P56181 108 aaKnown RBP3.76□□□□□ -1.81
VPS39-209ENST00000568029 Q6ZQY7 126 aa3.76□□□□□ -1.81
VPS39-209ENST00000568029 KCNQ1DNQ9H478 68 aa3.76□□□□□ -1.81
VPS39-209ENST00000568029 TRBV7-7A0A0K0K1E9 115 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 FUSP35637 526 aaKnown RBP eCLIP3.75□□□□□ -1.81
VPS39-209ENST00000568029 LRP2P98164 4655 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 SDIM1Q6ZPB5 146 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 Q6ZR54 194 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 C7orf33Q8WU49 177 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 DSCR8Q96T75 97 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 DHRS4-AS1Q9P1J3 65 aa3.75□□□□□ -1.81
VPS39-209ENST00000568029 LOC110117498A0A087WWA1 95 aa3.74□□□□□ -1.81
VPS39-209ENST00000568029 KRTAP10-6P60371 365 aaPredicted RBP3.74□□□□□ -1.81
VPS39-209ENST00000568029 CNBPP62633 177 aaKnown RBP3.74□□□□□ -1.81
VPS39-209ENST00000568029 Q5VSD8 79 aa3.74□□□□□ -1.81
VPS39-209ENST00000568029 ANAPC13Q9BS18 74 aa3.74□□□□□ -1.81
VPS39-209ENST00000568029 IGLV1-50A0A075B6I6 118 aa3.73□□□□□ -1.81
VPS39-209ENST00000568029 ETDCA0A1B0GVM5 59 aa3.73□□□□□ -1.81
VPS39-209ENST00000568029 Q6JHZ5 121 aa3.73□□□□□ -1.81
VPS39-209ENST00000568029 MRPL55Q7Z7F7 128 aaKnown RBP3.73□□□□□ -1.81
VPS39-209ENST00000568029 SMCR5Q8TEV8 140 aa3.73□□□□□ -1.81
VPS39-209ENST00000568029 UBL5Q9BZL1 73 aa3.73□□□□□ -1.81
VPS39-209ENST00000568029 DNAH8Q96JB1 4490 aa3.73□□□□□ -1.81
VPS39-209ENST00000568029 NBDYA0A0U1RRE5 68 aa3.72□□□□□ -1.81
VPS39-209ENST00000568029 HAMPP81172 84 aa3.72□□□□□ -1.81
VPS39-209ENST00000568029 ATP5EP2Q5VTU8 51 aa3.72□□□□□ -1.81
VPS39-209ENST00000568029 Q6ZQT0 140 aa3.72□□□□□ -1.81
VPS39-209ENST00000568029 LINC00846Q9NV44 126 aa3.72□□□□□ -1.81
VPS39-209ENST00000568029 PKHD1L1Q86WI1 4243 aa3.71□□□□□ -1.82
VPS39-209ENST00000568029 RPL37AP8A6NKH3 93 aa3.71□□□□□ -1.82
VPS39-209ENST00000568029 FAM19A5Q7Z5A7 132 aaPredicted RBP3.71□□□□□ -1.82
VPS39-209ENST00000568029 FAT4Q6V0I7 4981 aa3.7□□□□□ -1.82
VPS39-209ENST00000568029 FAM168BA1KXE4 195 aa3.7□□□□□ -1.82
VPS39-209ENST00000568029 SPRR1AP35321 89 aa3.7□□□□□ -1.82
VPS39-209ENST00000568029 REG3GQ6UW15 175 aa3.7□□□□□ -1.82
VPS39-209ENST00000568029 Q6ZRX8 168 aa3.7□□□□□ -1.82
VPS39-209ENST00000568029 LINC00474Q9P2X8 69 aa3.7□□□□□ -1.82
VPS39-209ENST00000568029 A0A096LNI7 61 aa3.69□□□□□ -1.82
VPS39-209ENST00000568029 IGKV3D-7A0A0C4DH55 119 aa3.69□□□□□ -1.82
VPS39-209ENST00000568029 TRBV7-4A0A0J9YYF1 115 aa3.69□□□□□ -1.82
VPS39-209ENST00000568029 KRTAP4-16G5E9R7 235 aaPredicted RBP3.69□□□□□ -1.82
VPS39-209ENST00000568029 SMR3BP02814 79 aaPredicted RBP3.69□□□□□ -1.82
VPS39-209ENST00000568029 UBE2BP63146 152 aa3.69□□□□□ -1.82
VPS39-209ENST00000568029 C1orf134Q5TEV5 83 aa3.69□□□□□ -1.82
VPS39-209ENST00000568029 C9orf163Q8N9P6 203 aa3.69□□□□□ -1.82
VPS39-209ENST00000568029 DEFB105AQ8NG35 78 aa3.69□□□□□ -1.82
VPS39-209ENST00000568029 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.68□□□□□ -1.82
VPS39-209ENST00000568029 IGKV2-24A0A0C4DH68 120 aa3.68□□□□□ -1.82
VPS39-209ENST00000568029 FAM236AA0A1B0GUQ0 79 aa3.68□□□□□ -1.82
VPS39-209ENST00000568029 FAM236BA0A1B0GV22 79 aa3.68□□□□□ -1.82
VPS39-209ENST00000568029 A0A1B0GW54 56 aa3.68□□□□□ -1.82
VPS39-209ENST00000568029 DPH3Q96FX2 82 aa3.68□□□□□ -1.82
VPS39-209ENST00000568029 TNXBP22105 4242 aa3.68□□□□□ -1.82
VPS39-209ENST00000568029 A0A1W2PNN7 141 aa3.67□□□□□ -1.82
VPS39-209ENST00000568029 LRCOL1A6NCL2 159 aa3.67□□□□□ -1.82
VPS39-209ENST00000568029 ATOX1O00244 68 aa3.67□□□□□ -1.82
VPS39-209ENST00000568029 LCE1FQ5T754 118 aa3.67□□□□□ -1.82
VPS39-209ENST00000568029 Q9BRP9 147 aa3.67□□□□□ -1.82
VPS39-209ENST00000568029 IGLV5-48A0A075B6I7 105 aa3.66□□□□□ -1.82
VPS39-209ENST00000568029 F8WEM9 126 aa3.66□□□□□ -1.82
VPS39-209ENST00000568029 HIST1H4AP62805 103 aaKnown RBP3.66□□□□□ -1.82
VPS39-209ENST00000568029 Q6ZRN7 208 aaPredicted RBP3.66□□□□□ -1.82
VPS39-209ENST00000568029 FAM19A1Q7Z5A9 133 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 188.7 ms