RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 VPS13CQ709C8 3753 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 C2CD3Q4AC94 2353 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 CSMD2Q7Z408 3487 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 GVQW2A0A096LPI5 108 aaPredicted RBP1.72□□□□□ -2.13
VPS41-210ENST00000462429 C9JAW5 83 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 TMEM256-PLSCR3K7ERE1 68 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 DEFB4AO15263 64 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 TCL1BO95988 128 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 RPL28P46779 137 aaKnown RBP1.72□□□□□ -2.13
VPS41-210ENST00000462429 NPC2P61916 151 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 LINC01556Q5JQF7 62 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 LINC01600Q96MT4 127 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 SIGMAR1Q99720 223 aa1.72□□□□□ -2.13
VPS41-210ENST00000462429 NAA38Q9BRA0 125 aaKnown RBP1.72□□□□□ -2.13
VPS41-210ENST00000462429 SETD2Q9BYW2 2564 aaPredicted RBP1.71□□□□□ -2.14
VPS41-210ENST00000462429 ZFHX3Q15911 3703 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 JMJD7-PLA2G4BH0Y9G9 81 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 SCGB1A1P11684 91 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 PDE6GP18545 87 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 SPAG11BQ08648 103 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 WFDC2Q14508 124 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 Q9BRP9 147 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 ORMDL1Q9P0S3 153 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 TENM4Q6N022 2769 aa1.71□□□□□ -2.14
VPS41-210ENST00000462429 F8P00451 2351 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 NF1P21359 2839 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 TRBV7-6A0A0J9YX20 115 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 NUPR2A6NF83 97 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 BAALC-AS2P0C853 105 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 KRTAP12-1P59990 96 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 TPRXLQ17RH7 258 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 CLPSL2Q6UWE3 100 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 ENHOQ6UWT2 76 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 HECTD1Q9ULT8 2610 aa1.7□□□□□ -2.14
VPS41-210ENST00000462429 SETXQ7Z333 2677 aaKnown RBP1.7□□□□□ -2.14
VPS41-210ENST00000462429 GCN1Q92616 2671 aaKnown RBP1.7□□□□□ -2.14
VPS41-210ENST00000462429 NSD1Q96L73 2696 aaPredicted RBP1.69□□□□□ -2.14
VPS41-210ENST00000462429 TEP1Q99973 2627 aaKnown RBP1.69□□□□□ -2.14
VPS41-210ENST00000462429 hADV29S1A0JD25 119 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 M0R378 163 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 TMEM258P61165 79 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 ESRGQ1W209 222 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 UBE2DNLQ8IWF7 75 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 Q8NDZ9 215 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 SMIM11BQ8TCY0 68 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 DIRC1Q969H9 104 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 IMUPQ9GZP8 106 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 ZNF469Q96JG9 3925 aaPredicted RBP1.69□□□□□ -2.14
VPS41-210ENST00000462429 JMJD1CQ15652 2540 aa1.69□□□□□ -2.14
VPS41-210ENST00000462429 NBPF19A0A087WUL8 3843 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 ATRQ13535 2644 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 TEX49A0A1B0GTD5 131 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 A0A1B0GV72 72 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 A0A1B0GW54 56 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 RBM3P98179 157 aaKnown RBP1.68□□□□□ -2.14
VPS41-210ENST00000462429 Q6Q795 121 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 UNQ6190/PRO20217Q6UXQ8 127 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.68□□□□□ -2.14
VPS41-210ENST00000462429 SOSTDC1Q6X4U4 206 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 WFDC10BQ8IUB3 73 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 Q8N814 137 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 CLEC2BQ92478 149 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 DSCR8Q96T75 97 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 PRO2289Q9P1D8 64 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 LINC00474Q9P2X8 69 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 HIVEP1P15822 2718 aa1.68□□□□□ -2.14
VPS41-210ENST00000462429 OTOGQ6ZRI0 2925 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 TRAV23DV6A0A075B6W5 121 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 LOC107984640A0A0U1RRK4 108 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 K7EIL1 84 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 COX7BP24311 80 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 LINC00575Q6W349 94 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 KTN1-AS1Q86SY8 53 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 LINC00643Q86TS7 51 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 UBL5Q9BZL1 73 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 LAMTOR3Q9UHA4 124 aa1.67□□□□□ -2.14
VPS41-210ENST00000462429 FLNBO75369 2602 aaKnown RBP1.66□□□□□ -2.14
VPS41-210ENST00000462429 TRAV7A0A075B6U4 112 aa1.66□□□□□ -2.14
VPS41-210ENST00000462429 FAM236DA0A1B0GTK5 79 aa1.66□□□□□ -2.14
VPS41-210ENST00000462429 NCR3O14931 201 aa1.66□□□□□ -2.14
VPS41-210ENST00000462429 FAM236CP0DP71 79 aa1.66□□□□□ -2.14
VPS41-210ENST00000462429 C9orf116Q5BN46 136 aaPredicted RBP1.66□□□□□ -2.14
VPS41-210ENST00000462429 ATP5EP2Q5VTU8 51 aa1.66□□□□□ -2.14
VPS41-210ENST00000462429 C6orf48Q9UBA6 75 aa1.66□□□□□ -2.14
VPS41-210ENST00000462429 TRBV10-3A0A0K0K1G6 114 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 ETDCA0A1B0GVM5 59 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 CCKP06307 115 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 ELOF1P60002 83 aaKnown RBP1.65□□□□□ -2.15
VPS41-210ENST00000462429 CNBPP62633 177 aaKnown RBP1.65□□□□□ -2.15
VPS41-210ENST00000462429 Q6ZQY7 126 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 SPACA4Q8TDM5 124 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 DPH3Q96FX2 82 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 OBSCN-AS1Q96MR7 158 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 KCNQ1DNQ9H478 68 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 XAGE1AQ9HD64 81 aa1.65□□□□□ -2.15
VPS41-210ENST00000462429 AKAP9Q99996 3911 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 NIPBLQ6KC79 2804 aaeCLIP1.64□□□□□ -2.15
VPS41-210ENST00000462429 LOC110117498A0A087WWA1 95 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 F8WEM9 126 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 KRTAP21-3Q3LHN1 58 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms