RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SNCGO76070 127 aa12.1□□□□□ -0.47
VPS28-207ENST00000526977 hADV29S1A0JD25 119 aa12.1□□□□□ -0.47
VPS28-207ENST00000526977 GAGE2BQ13066 116 aa12.09□□□□□ -0.47
VPS28-207ENST00000526977 OBSCN-AS1Q96MR7 158 aa12.08□□□□□ -0.48
VPS28-207ENST00000526977 TRBV7-6A0A0J9YX20 115 aa12.08□□□□□ -0.48
VPS28-207ENST00000526977 NKAPP1Q8N9T2 125 aa12.08□□□□□ -0.48
VPS28-207ENST00000526977 SCGB1A1P11684 91 aa12.07□□□□□ -0.48
VPS28-207ENST00000526977 FAM168BA1KXE4 195 aa12.06□□□□□ -0.48
VPS28-207ENST00000526977 INAFM2P0DMQ5 153 aa12.06□□□□□ -0.48
VPS28-207ENST00000526977 COX7BP24311 80 aa12.06□□□□□ -0.48
VPS28-207ENST00000526977 C7orf33Q8WU49 177 aa12.06□□□□□ -0.48
VPS28-207ENST00000526977 DNAH17Q9UFH2 4485 aa12.06□□□□□ -0.48
VPS28-207ENST00000526977 C16orf90A8MZG2 172 aa12.06□□□□□ -0.48
VPS28-207ENST00000526977 TMEM256-PLSCR3K7ERE1 68 aa12.05□□□□□ -0.48
VPS28-207ENST00000526977 ELOF1P60002 83 aaKnown RBP12.05□□□□□ -0.48
VPS28-207ENST00000526977 KRTAP7-1Q8IUC3 87 aa12.05□□□□□ -0.48
VPS28-207ENST00000526977 IGLV5-37A0A075B6J1 123 aa12.04□□□□□ -0.48
VPS28-207ENST00000526977 SDIM1Q6ZPB5 146 aa12.04□□□□□ -0.48
VPS28-207ENST00000526977 KCNQ1DNQ9H478 68 aa12.04□□□□□ -0.48
VPS28-207ENST00000526977 IGLV5-52A0A0A0MRZ9 124 aa12.03□□□□□ -0.48
VPS28-207ENST00000526977 ACYP1P07311 99 aa12.03□□□□□ -0.48
VPS28-207ENST00000526977 LINC00336Q6ZUF6 198 aa12.03□□□□□ -0.48
VPS28-207ENST00000526977 FRAS1Q86XX4 4008 aa12.02□□□□□ -0.49
VPS28-207ENST00000526977 A0A096LNI7 61 aa12.01□□□□□ -0.49
VPS28-207ENST00000526977 C14orf132Q9NPU4 83 aa12.01□□□□□ -0.49
VPS28-207ENST00000526977 LINC00474Q9P2X8 69 aa12.01□□□□□ -0.49
VPS28-207ENST00000526977 Q6ZQY7 126 aa12□□□□□ -0.49
VPS28-207ENST00000526977 LINC00528Q8N1L1 170 aa12□□□□□ -0.49
VPS28-207ENST00000526977 IGKV2-24A0A0C4DH68 120 aa11.99□□□□□ -0.49
VPS28-207ENST00000526977 KMT2CQ8NEZ4 4911 aaKnown RBP11.98□□□□□ -0.49
VPS28-207ENST00000526977 IGLV1-50A0A075B6I6 118 aa11.98□□□□□ -0.49
VPS28-207ENST00000526977 RPL37AP8A6NKH3 93 aa11.98□□□□□ -0.49
VPS28-207ENST00000526977 GAGE2AQ6NT46 116 aa11.98□□□□□ -0.49
VPS28-207ENST00000526977 FAM19A5Q7Z5A7 132 aaPredicted RBP11.98□□□□□ -0.49
VPS28-207ENST00000526977 A0A1B0GV72 72 aa11.97□□□□□ -0.49
VPS28-207ENST00000526977 JMJD7-PLA2G4BH0Y9G9 81 aa11.97□□□□□ -0.49
VPS28-207ENST00000526977 FUSP35637 526 aaKnown RBP eCLIP11.96□□□□□ -0.49
VPS28-207ENST00000526977 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.96□□□□□ -0.49
VPS28-207ENST00000526977 KRTAP10-2P60368 255 aa11.96□□□□□ -0.5
VPS28-207ENST00000526977 MRPL55Q7Z7F7 128 aaKnown RBP11.96□□□□□ -0.5
VPS28-207ENST00000526977 SMCR5Q8TEV8 140 aa11.96□□□□□ -0.5
VPS28-207ENST00000526977 RYR2Q92736 4967 aa11.94□□□□□ -0.5
VPS28-207ENST00000526977 HECTD4Q9Y4D8 3996 aa11.94□□□□□ -0.5
VPS28-207ENST00000526977 H3BQ85 93 aa11.94□□□□□ -0.5
VPS28-207ENST00000526977 CHTF8P0CG12 524 aa11.93□□□□□ -0.5
VPS28-207ENST00000526977 FAT2Q9NYQ8 4349 aa11.93□□□□□ -0.5
VPS28-207ENST00000526977 KRTAP4-16G5E9R7 235 aaPredicted RBP11.93□□□□□ -0.5
VPS28-207ENST00000526977 PRYO14603 147 aa11.93□□□□□ -0.5
VPS28-207ENST00000526977 SPRR1AP35321 89 aa11.92□□□□□ -0.5
VPS28-207ENST00000526977 A0A1W2PNN7 141 aa11.91□□□□□ -0.5
VPS28-207ENST00000526977 DPH3Q96FX2 82 aa11.91□□□□□ -0.5
VPS28-207ENST00000526977 SPACA4Q8TDM5 124 aa11.91□□□□□ -0.5
VPS28-207ENST00000526977 LAMTOR3Q9UHA4 124 aa11.9□□□□□ -0.5
VPS28-207ENST00000526977 B5MCH6 92 aa11.89□□□□□ -0.51
VPS28-207ENST00000526977 CCKP06307 115 aa11.89□□□□□ -0.51
VPS28-207ENST00000526977 Q6Q795 121 aa11.89□□□□□ -0.51
VPS28-207ENST00000526977 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.89□□□□□ -0.51
VPS28-207ENST00000526977 GHRHP01286 108 aa11.88□□□□□ -0.51
VPS28-207ENST00000526977 RBM3P98179 157 aaKnown RBP11.88□□□□□ -0.51
VPS28-207ENST00000526977 LINC00643Q86TS7 51 aa11.88□□□□□ -0.51
VPS28-207ENST00000526977 DNAH11Q96DT5 4516 aa11.88□□□□□ -0.51
VPS28-207ENST00000526977 PANO1I0J062 215 aa11.87□□□□□ -0.51
VPS28-207ENST00000526977 Q6ZRX8 168 aa11.87□□□□□ -0.51
VPS28-207ENST00000526977 ETDCA0A1B0GVM5 59 aa11.86□□□□□ -0.51
VPS28-207ENST00000526977 LINC00846Q9NV44 126 aa11.86□□□□□ -0.51
VPS28-207ENST00000526977 TRBV7-7A0A0K0K1E9 115 aa11.85□□□□□ -0.51
VPS28-207ENST00000526977 Q9BRP9 147 aa11.85□□□□□ -0.51
VPS28-207ENST00000526977 DHRS4-AS1Q9P1J3 65 aa11.85□□□□□ -0.51
VPS28-207ENST00000526977 EPM2AB3EWF7 344 aa11.84□□□□□ -0.51
VPS28-207ENST00000526977 REG3GQ6UW15 175 aa11.84□□□□□ -0.51
VPS28-207ENST00000526977 PKD1P98161 4303 aa11.83□□□□□ -0.52
VPS28-207ENST00000526977 A0A1B0GVY2 172 aa11.83□□□□□ -0.52
VPS28-207ENST00000526977 LOC110117498A0A087WWA1 95 aa11.82□□□□□ -0.52
VPS28-207ENST00000526977 NDUFV3P56181 108 aaKnown RBP11.82□□□□□ -0.52
VPS28-207ENST00000526977 Q6ZQT0 140 aa11.82□□□□□ -0.52
VPS28-207ENST00000526977 PLAC8Q9NZF1 115 aa11.81□□□□□ -0.52
VPS28-207ENST00000526977 DNAH5Q8TE73 4624 aa11.8□□□□□ -0.52
VPS28-207ENST00000526977 KRTAP10-1P60331 282 aa11.8□□□□□ -0.52
VPS28-207ENST00000526977 DSCR8Q96T75 97 aa11.8□□□□□ -0.52
VPS28-207ENST00000526977 Q8N377 158 aa11.79□□□□□ -0.52
VPS28-207ENST00000526977 DEFB105AQ8NG35 78 aa11.79□□□□□ -0.52
VPS28-207ENST00000526977 IMUPQ9GZP8 106 aa11.79□□□□□ -0.52
VPS28-207ENST00000526977 Q6ZSA8 131 aa11.79□□□□□ -0.52
VPS28-207ENST00000526977 LINC01547P58512 204 aaPredicted RBP11.78□□□□□ -0.52
VPS28-207ENST00000526977 PHF5AQ7RTV0 110 aaKnown RBP11.78□□□□□ -0.52
VPS28-207ENST00000526977 ERC2-IT1O76042 136 aa11.77□□□□□ -0.53
VPS28-207ENST00000526977 FAM30AQ9NZY2 134 aa11.77□□□□□ -0.53
VPS28-207ENST00000526977 TRBV7-4A0A0J9YYF1 115 aa11.76□□□□□ -0.53
VPS28-207ENST00000526977 PDE6GP18545 87 aa11.76□□□□□ -0.53
VPS28-207ENST00000526977 UBE2BP63146 152 aa11.76□□□□□ -0.53
VPS28-207ENST00000526977 KRTAP11-1Q8IUC1 163 aa11.76□□□□□ -0.53
VPS28-207ENST00000526977 ST20-AS1Q8NBB2 130 aa11.76□□□□□ -0.53
VPS28-207ENST00000526977 RYR3Q15413 4870 aa11.74□□□□□ -0.53
VPS28-207ENST00000526977 IGLV5-48A0A075B6I7 105 aa11.72□□□□□ -0.53
VPS28-207ENST00000526977 Q6JHZ5 121 aa11.72□□□□□ -0.53
VPS28-207ENST00000526977 CIRBP-AS1Q8TBR5 109 aa11.72□□□□□ -0.53
VPS28-207ENST00000526977 FAM19A1Q7Z5A9 133 aa11.72□□□□□ -0.53
VPS28-207ENST00000526977 ANAPC13Q9BS18 74 aa11.72□□□□□ -0.53
VPS28-207ENST00000526977 IGKV3D-7A0A0C4DH55 119 aa11.7□□□□□ -0.54
VPS28-207ENST00000526977 PRLHP81277 87 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms