RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 XAGE1AQ9HD64 81 aa7.54□□□□□ -1.2
USP54-209ENST00000464635 FAM30AQ9NZY2 134 aa7.54□□□□□ -1.2
USP54-209ENST00000464635 H3BT86 120 aa7.53□□□□□ -1.2
USP54-209ENST00000464635 INAFM2P0DMQ5 153 aa7.53□□□□□ -1.2
USP54-209ENST00000464635 LINC01620Q4KN68 170 aa7.53□□□□□ -1.2
USP54-209ENST00000464635 GAGE2EQ4V326 116 aa7.53□□□□□ -1.2
USP54-209ENST00000464635 GAGE2DQ9UEU5 116 aa7.53□□□□□ -1.2
USP54-209ENST00000464635 H3BQ85 93 aa7.52□□□□□ -1.21
USP54-209ENST00000464635 PRR3P79522 188 aaKnown RBP7.52□□□□□ -1.21
USP54-209ENST00000464635 RPL18AQ02543 176 aaKnown RBP7.52□□□□□ -1.21
USP54-209ENST00000464635 HERC1Q15751 4861 aa7.51□□□□□ -1.21
USP54-209ENST00000464635 VPS13BQ7Z7G8 4022 aa7.51□□□□□ -1.21
USP54-209ENST00000464635 KCNQ1DNQ9H478 68 aa7.51□□□□□ -1.21
USP54-209ENST00000464635 SRRM2Q9UQ35 2752 aaKnown RBP7.5□□□□□ -1.21
USP54-209ENST00000464635 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.5□□□□□ -1.21
USP54-209ENST00000464635 NCR3O14931 201 aa7.5□□□□□ -1.21
USP54-209ENST00000464635 NKAPP1Q8N9T2 125 aa7.5□□□□□ -1.21
USP54-209ENST00000464635 FLG2Q5D862 2391 aaPredicted RBP7.49□□□□□ -1.21
USP54-209ENST00000464635 TRAV23DV6A0A075B6W5 121 aa7.49□□□□□ -1.21
USP54-209ENST00000464635 TRBV10-3A0A0K0K1G6 114 aa7.49□□□□□ -1.21
USP54-209ENST00000464635 SLC25A20O43772 301 aa7.49□□□□□ -1.21
USP54-209ENST00000464635 GHRHP01286 108 aa7.49□□□□□ -1.21
USP54-209ENST00000464635 SDIM1Q6ZPB5 146 aa7.49□□□□□ -1.21
USP54-209ENST00000464635 ANKRD29Q8N6D5 301 aa7.49□□□□□ -1.21
USP54-209ENST00000464635 LINC00167Q96N53 147 aa7.49□□□□□ -1.21
USP54-209ENST00000464635 MYCBP2O75592 4640 aa7.48□□□□□ -1.21
USP54-209ENST00000464635 ZNF73O43830 326 aaPredicted RBP7.48□□□□□ -1.21
USP54-209ENST00000464635 GAGE2BQ13066 116 aa7.48□□□□□ -1.21
USP54-209ENST00000464635 CLEC2BQ92478 149 aa7.48□□□□□ -1.21
USP54-209ENST00000464635 DIRC1Q969H9 104 aa7.48□□□□□ -1.21
USP54-209ENST00000464635 IGLV1-50A0A075B6I6 118 aa7.47□□□□□ -1.21
USP54-209ENST00000464635 C9JAW5 83 aa7.47□□□□□ -1.21
USP54-209ENST00000464635 PRYO14603 147 aa7.47□□□□□ -1.21
USP54-209ENST00000464635 SPRR1AP35321 89 aa7.47□□□□□ -1.21
USP54-209ENST00000464635 SMCPP49901 116 aaPredicted RBP7.47□□□□□ -1.21
USP54-209ENST00000464635 C6orf99Q4VX62 202 aa7.47□□□□□ -1.21
USP54-209ENST00000464635 Q6ZSA8 131 aa7.47□□□□□ -1.21
USP54-209ENST00000464635 DMBT1Q9UGM3 2413 aaPredicted RBP7.47□□□□□ -1.21
USP54-209ENST00000464635 FAM229AH3BQW9 127 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 DNAL4O96015 105 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 ELOF1P60002 83 aaKnown RBP7.46□□□□□ -1.22
USP54-209ENST00000464635 OCIAD2Q56VL3 154 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 SERTAD4-AS1Q5TG53 156 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 LINC00575Q6W349 94 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 MRPL55Q7Z7F7 128 aaKnown RBP7.46□□□□□ -1.22
USP54-209ENST00000464635 TEN1Q86WV5 123 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 C7orf33Q8WU49 177 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 C22orf24Q9Y442 160 aa7.46□□□□□ -1.22
USP54-209ENST00000464635 A0A096LNI7 61 aa7.45□□□□□ -1.22
USP54-209ENST00000464635 FAM218AQ96MZ4 157 aa7.45□□□□□ -1.22
USP54-209ENST00000464635 J3QR89 54 aa7.44□□□□□ -1.22
USP54-209ENST00000464635 K7ERU9 68 aa7.44□□□□□ -1.22
USP54-209ENST00000464635 KRTAP7-1Q8IUC3 87 aa7.44□□□□□ -1.22
USP54-209ENST00000464635 hADV29S1A0JD25 119 aa7.43□□□□□ -1.22
USP54-209ENST00000464635 TMEM256-PLSCR3K7ERE1 68 aa7.43□□□□□ -1.22
USP54-209ENST00000464635 COX7BP24311 80 aa7.43□□□□□ -1.22
USP54-209ENST00000464635 SCXQ7RTU7 201 aa7.43□□□□□ -1.22
USP54-209ENST00000464635 LINC00528Q8N1L1 170 aa7.43□□□□□ -1.22
USP54-209ENST00000464635 A0A087WYN8 130 aa7.42□□□□□ -1.22
USP54-209ENST00000464635 KRTAP4-16G5E9R7 235 aaPredicted RBP7.42□□□□□ -1.22
USP54-209ENST00000464635 BAALC-AS2P0C853 105 aa7.42□□□□□ -1.22
USP54-209ENST00000464635 ETDBQ3ZM63 59 aa7.42□□□□□ -1.22
USP54-209ENST00000464635 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.42□□□□□ -1.22
USP54-209ENST00000464635 PPDPFLQ8WWR9 84 aa7.42□□□□□ -1.22
USP54-209ENST00000464635 ORMDL1Q9P0S3 153 aa7.42□□□□□ -1.22
USP54-209ENST00000464635 A0A1W2PNN7 141 aa7.4□□□□□ -1.22
USP54-209ENST00000464635 SPACA4Q8TDM5 124 aa7.4□□□□□ -1.22
USP54-209ENST00000464635 DHRS4-AS1Q9P1J3 65 aa7.4□□□□□ -1.22
USP54-209ENST00000464635 FAM168BA1KXE4 195 aa7.39□□□□□ -1.23
USP54-209ENST00000464635 H0Y9J4 135 aa7.39□□□□□ -1.23
USP54-209ENST00000464635 C21orf62-AS1Q17RA5 79 aa7.39□□□□□ -1.23
USP54-209ENST00000464635 Q6ZRX8 168 aa7.38□□□□□ -1.23
USP54-209ENST00000464635 FAM19A5Q7Z5A7 132 aaPredicted RBP7.38□□□□□ -1.23
USP54-209ENST00000464635 OBSCN-AS1Q96MR7 158 aa7.38□□□□□ -1.23
USP54-209ENST00000464635 IGKV2-24A0A0C4DH68 120 aa7.37□□□□□ -1.23
USP54-209ENST00000464635 B5MCH6 92 aa7.37□□□□□ -1.23
USP54-209ENST00000464635 JMJD7-PLA2G4BH0Y9G9 81 aa7.37□□□□□ -1.23
USP54-209ENST00000464635 PLA2G1BP04054 148 aaKnown RBP7.37□□□□□ -1.23
USP54-209ENST00000464635 KRTAP10-4P60372 401 aaPredicted RBP7.37□□□□□ -1.23
USP54-209ENST00000464635 REG3GQ6UW15 175 aa7.37□□□□□ -1.23
USP54-209ENST00000464635 CIRBP-AS1Q8TBR5 109 aa7.37□□□□□ -1.23
USP54-209ENST00000464635 PLAC8Q9NZF1 115 aa7.37□□□□□ -1.23
USP54-209ENST00000464635 MTURNQ8N3F0 131 aa7.36□□□□□ -1.23
USP54-209ENST00000464635 ETDCA0A1B0GVM5 59 aa7.35□□□□□ -1.23
USP54-209ENST00000464635 LRP1Q07954 4544 aaKnown RBP7.33□□□□□ -1.24
USP54-209ENST00000464635 RPL37AP8A6NKH3 93 aa7.33□□□□□ -1.24
USP54-209ENST00000464635 PANO1I0J062 215 aa7.33□□□□□ -1.24
USP54-209ENST00000464635 J3QL48 77 aa7.33□□□□□ -1.24
USP54-209ENST00000464635 FAM240AA0A1B0GVK7 77 aa7.32□□□□□ -1.24
USP54-209ENST00000464635 ACYP1P07311 99 aa7.32□□□□□ -1.24
USP54-209ENST00000464635 CHTF8P0CG12 524 aa7.32□□□□□ -1.24
USP54-209ENST00000464635 PDE6GP18545 87 aa7.32□□□□□ -1.24
USP54-209ENST00000464635 Q6ZQY7 126 aa7.32□□□□□ -1.24
USP54-209ENST00000464635 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.32□□□□□ -1.24
USP54-209ENST00000464635 PKHD1L1Q86WI1 4243 aa7.32□□□□□ -1.24
USP54-209ENST00000464635 FAT3Q8TDW7 4589 aa7.31□□□□□ -1.24
USP54-209ENST00000464635 TEX49A0A1B0GTD5 131 aa7.31□□□□□ -1.24
USP54-209ENST00000464635 KRTAP29-1A8MX34 341 aaPredicted RBP7.31□□□□□ -1.24
USP54-209ENST00000464635 IGLV5-48A0A075B6I7 105 aa7.3□□□□□ -1.24
USP54-209ENST00000464635 UBE2BP63146 152 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms