RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 PAPPA-AS1Q5QFB9 102 aa4.15□□□□□ -1.75
LIMCH1-204ENST00000446625 ZNF625Q96I27 306 aaPredicted RBP4.15□□□□□ -1.75
LIMCH1-204ENST00000446625 TINCRA0A1B0GVN0 87 aa4.14□□□□□ -1.75
LIMCH1-204ENST00000446625 HBDP02042 147 aa4.14□□□□□ -1.75
LIMCH1-204ENST00000446625 A0A0U1RRA0 63 aa4.13□□□□□ -1.75
LIMCH1-204ENST00000446625 LEPROTL1O95214 131 aa4.13□□□□□ -1.75
LIMCH1-204ENST00000446625 C3orf79P0CE67 100 aa4.13□□□□□ -1.75
LIMCH1-204ENST00000446625 ERASQ7Z444 233 aa4.13□□□□□ -1.75
LIMCH1-204ENST00000446625 CST9LQ9H4G1 147 aa4.13□□□□□ -1.75
LIMCH1-204ENST00000446625 ERG28Q9UKR5 140 aa4.13□□□□□ -1.75
LIMCH1-204ENST00000446625 CFC1P0CG37 223 aa4.12□□□□□ -1.75
LIMCH1-204ENST00000446625 AKR1D1P51857 326 aa4.12□□□□□ -1.75
LIMCH1-204ENST00000446625 JOSD1Q15040 202 aaPredicted RBP4.12□□□□□ -1.75
LIMCH1-204ENST00000446625 PYY3Q5JQD4 70 aa4.12□□□□□ -1.75
LIMCH1-204ENST00000446625 KRTAP9-8Q9BYQ0 159 aa4.12□□□□□ -1.75
LIMCH1-204ENST00000446625 HSPB8Q9UJY1 196 aa4.12□□□□□ -1.75
LIMCH1-204ENST00000446625 LINC01549A6NIU2 74 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 H3BRM9 83 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 PRYO14603 147 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 ERC2-IT1O76042 136 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 ZNF22P17026 224 aaPredicted RBP4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 G0S2P27469 103 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 SPRR1AP35321 89 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 KRTDAPP60985 99 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 PMVKQ15126 192 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 IFI27L1Q96BM0 104 aa4.11□□□□□ -1.75
LIMCH1-204ENST00000446625 KRTAP4-8A0A0G2JLE6 195 aa4.1□□□□□ -1.75
LIMCH1-204ENST00000446625 ETDCA0A1B0GVM5 59 aa4.1□□□□□ -1.75
LIMCH1-204ENST00000446625 SYS1-DBNDD2H3BUS1 97 aa4.1□□□□□ -1.75
LIMCH1-204ENST00000446625 SMIM6P0DI80 62 aa4.1□□□□□ -1.75
LIMCH1-204ENST00000446625 COX17Q14061 63 aa4.1□□□□□ -1.75
LIMCH1-204ENST00000446625 PET117Q6UWS5 81 aa4.1□□□□□ -1.75
LIMCH1-204ENST00000446625 MAP1LC3CQ9BXW4 147 aa4.1□□□□□ -1.75
LIMCH1-204ENST00000446625 IGLV5-39A0A0G2JS06 123 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 C11orf86A6NJI1 115 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 NCR3O14931 201 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 IGLV6-57P01721 117 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 IGLC3P0DOY3 106 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 C9orf153Q5TBE3 101 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 LINC01545Q5VT33 79 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 KCNQ1DNQ9H478 68 aa4.09□□□□□ -1.75
LIMCH1-204ENST00000446625 TRAV12-1A0A0B4J245 112 aa4.08□□□□□ -1.76
LIMCH1-204ENST00000446625 SCGB1D1O95968 90 aa4.08□□□□□ -1.76
LIMCH1-204ENST00000446625 TMEM170BQ5T4T1 132 aa4.08□□□□□ -1.76
LIMCH1-204ENST00000446625 LINC00518Q8N0U6 118 aa4.08□□□□□ -1.76
LIMCH1-204ENST00000446625 NEBP20929 6669 aa4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 B5MCH6 92 aa4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 H0Y8G0 127 aa4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 LINC00158P58513 81 aa4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 RPL37P61927 97 aaKnown RBP4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 Q6Q795 121 aa4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 C12orf57Q99622 126 aa4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 PMCHL2Q9BQD1 86 aa4.07□□□□□ -1.76
LIMCH1-204ENST00000446625 TRBV10-3A0A0K0K1G6 114 aa4.06□□□□□ -1.76
LIMCH1-204ENST00000446625 C20orf202A1L168 122 aa4.06□□□□□ -1.76
LIMCH1-204ENST00000446625 HRCT1Q6UXD1 115 aa4.06□□□□□ -1.76
LIMCH1-204ENST00000446625 BOD1L2Q8IYS8 172 aa4.06□□□□□ -1.76
LIMCH1-204ENST00000446625 Q9BRP9 147 aa4.06□□□□□ -1.76
LIMCH1-204ENST00000446625 CHTOPQ9Y3Y2 248 aaKnown RBP4.06□□□□□ -1.76
LIMCH1-204ENST00000446625 SMIM13P0DJ93 91 aa4.05□□□□□ -1.76
LIMCH1-204ENST00000446625 KRTAP19-4Q3LI73 84 aa4.05□□□□□ -1.76
LIMCH1-204ENST00000446625 ATOH7Q8N100 152 aa4.05□□□□□ -1.76
LIMCH1-204ENST00000446625 LIMD2Q9BT23 127 aa4.05□□□□□ -1.76
LIMCH1-204ENST00000446625 DPM2O94777 84 aa4.04□□□□□ -1.76
LIMCH1-204ENST00000446625 IGKCP01834 107 aa4.04□□□□□ -1.76
LIMCH1-204ENST00000446625 ANKRD39Q53RE8 183 aa4.04□□□□□ -1.76
LIMCH1-204ENST00000446625 MEIG1Q5JSS6 88 aa4.04□□□□□ -1.76
LIMCH1-204ENST00000446625 VAMP8Q9BV40 100 aa4.04□□□□□ -1.76
LIMCH1-204ENST00000446625 PLNP26678 52 aa4.03□□□□□ -1.76
LIMCH1-204ENST00000446625 S100A12P80511 92 aa4.03□□□□□ -1.76
LIMCH1-204ENST00000446625 Q6ZRX8 168 aa4.03□□□□□ -1.76
LIMCH1-204ENST00000446625 MIR7-3HGQ8N6C7 128 aa4.03□□□□□ -1.76
LIMCH1-204ENST00000446625 TMEM223A0PJW6 202 aa4.02□□□□□ -1.77
LIMCH1-204ENST00000446625 MT2AP02795 61 aa4.02□□□□□ -1.77
LIMCH1-204ENST00000446625 SPATA45Q537H7 98 aa4.02□□□□□ -1.77
LIMCH1-204ENST00000446625 SFTA2Q6UW10 78 aa4.02□□□□□ -1.77
LIMCH1-204ENST00000446625 ST20-AS1Q8NBB2 130 aa4.02□□□□□ -1.77
LIMCH1-204ENST00000446625 PAM16Q9Y3D7 125 aa4.02□□□□□ -1.77
LIMCH1-204ENST00000446625 KRTAP6-3Q3LI67 103 aa4.01□□□□□ -1.77
LIMCH1-204ENST00000446625 LCE1DQ5T752 114 aa4.01□□□□□ -1.77
LIMCH1-204ENST00000446625 LCE4AQ5TA78 99 aa4.01□□□□□ -1.77
LIMCH1-204ENST00000446625 HSBP1L1C9JCN9 74 aa4□□□□□ -1.77
LIMCH1-204ENST00000446625 TSPEAR-AS2P59090 65 aa4□□□□□ -1.77
LIMCH1-204ENST00000446625 KRTAP9-3Q9BYQ3 159 aa4□□□□□ -1.77
LIMCH1-204ENST00000446625 PRO1933Q9H354 126 aa4□□□□□ -1.77
LIMCH1-204ENST00000446625 E9PLD3 99 aa3.99□□□□□ -1.77
LIMCH1-204ENST00000446625 MT1FP04733 61 aa3.99□□□□□ -1.77
LIMCH1-204ENST00000446625 DDTP30046 118 aa3.99□□□□□ -1.77
LIMCH1-204ENST00000446625 NPC2P61916 151 aa3.99□□□□□ -1.77
LIMCH1-204ENST00000446625 C1orf195Q5TG92 126 aa3.99□□□□□ -1.77
LIMCH1-204ENST00000446625 TSTD3H0UI37 97 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 H7C2G1 150 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 LEPROTO15243 131 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 COX8AP10176 69 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 HERVK_113P61574 105 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 PCP2Q8IVA1 136 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 C14orf144Q96I85 54 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 TTTY13Q9BZ97 58 aa3.98□□□□□ -1.77
LIMCH1-204ENST00000446625 DLEU1O43261 78 aa3.97□□□□□ -1.77
LIMCH1-204ENST00000446625 SPRR1BP22528 89 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms