RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 Q6ZRU5 148 aa8.69□□□□□ -1.02
LIMS1-204ENST00000409441 ORMDL1Q9P0S3 153 aa8.69□□□□□ -1.02
LIMS1-204ENST00000409441 NDUFC2-KCTD14E9PQ53 114 aa8.68□□□□□ -1.02
LIMS1-204ENST00000409441 FAT2Q9NYQ8 4349 aa8.68□□□□□ -1.02
LIMS1-204ENST00000409441 RPL18AQ02543 176 aaKnown RBP8.67□□□□□ -1.02
LIMS1-204ENST00000409441 C6orf99Q4VX62 202 aa8.67□□□□□ -1.02
LIMS1-204ENST00000409441 IGLV5-52A0A0A0MRZ9 124 aa8.66□□□□□ -1.02
LIMS1-204ENST00000409441 OBSCN-AS1Q96MR7 158 aa8.66□□□□□ -1.02
LIMS1-204ENST00000409441 CNBPP62633 177 aaKnown RBP8.65□□□□□ -1.02
LIMS1-204ENST00000409441 SYCNQ0VAF6 134 aa8.65□□□□□ -1.02
LIMS1-204ENST00000409441 VPREB1P12018 145 aa8.65□□□□□ -1.03
LIMS1-204ENST00000409441 LINC00575Q6W349 94 aa8.65□□□□□ -1.03
LIMS1-204ENST00000409441 XAGE1AQ9HD64 81 aa8.65□□□□□ -1.03
LIMS1-204ENST00000409441 TRAV23DV6A0A075B6W5 121 aa8.63□□□□□ -1.03
LIMS1-204ENST00000409441 TMEM256-PLSCR3K7ERE1 68 aa8.63□□□□□ -1.03
LIMS1-204ENST00000409441 M0R378 163 aa8.63□□□□□ -1.03
LIMS1-204ENST00000409441 Q6Q795 121 aa8.63□□□□□ -1.03
LIMS1-204ENST00000409441 PKD1P98161 4303 aa8.63□□□□□ -1.03
LIMS1-204ENST00000409441 TRBV7-6A0A0J9YX20 115 aa8.62□□□□□ -1.03
LIMS1-204ENST00000409441 TRBV10-3A0A0K0K1G6 114 aa8.62□□□□□ -1.03
LIMS1-204ENST00000409441 H3BQ85 93 aa8.62□□□□□ -1.03
LIMS1-204ENST00000409441 TLX1NBP0CAT3 122 aa8.62□□□□□ -1.03
LIMS1-204ENST00000409441 C9orf163Q8N9P6 203 aa8.62□□□□□ -1.03
LIMS1-204ENST00000409441 DIRC1Q969H9 104 aa8.62□□□□□ -1.03
LIMS1-204ENST00000409441 hADV29S1A0JD25 119 aa8.61□□□□□ -1.03
LIMS1-204ENST00000409441 JMJD7-PLA2G4BH0Y9G9 81 aa8.61□□□□□ -1.03
LIMS1-204ENST00000409441 SDIM1Q6ZPB5 146 aa8.6□□□□□ -1.03
LIMS1-204ENST00000409441 Q6ZRP5 223 aa8.6□□□□□ -1.03
LIMS1-204ENST00000409441 DNAH11Q96DT5 4516 aa8.59□□□□□ -1.03
LIMS1-204ENST00000409441 C16orf90A8MZG2 172 aa8.59□□□□□ -1.03
LIMS1-204ENST00000409441 GAGE2BQ13066 116 aa8.59□□□□□ -1.03
LIMS1-204ENST00000409441 GAGE2EQ4V326 116 aa8.59□□□□□ -1.03
LIMS1-204ENST00000409441 GAGE2DQ9UEU5 116 aa8.59□□□□□ -1.03
LIMS1-204ENST00000409441 ZNF73O43830 326 aaPredicted RBP8.58□□□□□ -1.04
LIMS1-204ENST00000409441 GAGE2AQ6NT46 116 aa8.58□□□□□ -1.04
LIMS1-204ENST00000409441 LINC00643Q86TS7 51 aa8.58□□□□□ -1.04
LIMS1-204ENST00000409441 PLA2G2DQ9UNK4 145 aa8.58□□□□□ -1.04
LIMS1-204ENST00000409441 COX7BP24311 80 aa8.58□□□□□ -1.04
LIMS1-204ENST00000409441 C9orf129Q5T035 196 aaKnown RBP8.58□□□□□ -1.04
LIMS1-204ENST00000409441 C14orf132Q9NPU4 83 aa8.58□□□□□ -1.04
LIMS1-204ENST00000409441 GHRHP01286 108 aa8.57□□□□□ -1.04
LIMS1-204ENST00000409441 ELOF1P60002 83 aaKnown RBP8.57□□□□□ -1.04
LIMS1-204ENST00000409441 KRTAP10-1P60331 282 aa8.57□□□□□ -1.04
LIMS1-204ENST00000409441 TRBV7-7A0A0K0K1E9 115 aa8.56□□□□□ -1.04
LIMS1-204ENST00000409441 IMUPQ9GZP8 106 aa8.55□□□□□ -1.04
LIMS1-204ENST00000409441 LOC107984640A0A0U1RRK4 108 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 A0A1B0GV72 72 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-204ENST00000409441 C4orf48Q5BLP8 95 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-204ENST00000409441 KRTAP9-2Q9BYQ4 174 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 HECTD4Q9Y4D8 3996 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 IGLV5-37A0A075B6J1 123 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 CCKP06307 115 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 NKAPP1Q8N9T2 125 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 SMCR5Q8TEV8 140 aa8.54□□□□□ -1.04
LIMS1-204ENST00000409441 PKIGQ9Y2B9 76 aa8.53□□□□□ -1.04
LIMS1-204ENST00000409441 A0A096LNI7 61 aa8.51□□□□□ -1.05
LIMS1-204ENST00000409441 IGKV2-24A0A0C4DH68 120 aa8.51□□□□□ -1.05
LIMS1-204ENST00000409441 CHTF8P0CG12 524 aa8.51□□□□□ -1.05
LIMS1-204ENST00000409441 Q6ZQY7 126 aa8.51□□□□□ -1.05
LIMS1-204ENST00000409441 DPH3Q96FX2 82 aa8.51□□□□□ -1.05
LIMS1-204ENST00000409441 KCNQ1DNQ9H478 68 aa8.51□□□□□ -1.05
LIMS1-204ENST00000409441 FAM30AQ9NZY2 134 aa8.51□□□□□ -1.05
LIMS1-204ENST00000409441 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.51□□□□□ -1.05
LIMS1-204ENST00000409441 KRTAP9-6A0A140TA67 174 aa8.5□□□□□ -1.05
LIMS1-204ENST00000409441 PANO1I0J062 215 aa8.5□□□□□ -1.05
LIMS1-204ENST00000409441 SERTAD4-AS1Q5TG53 156 aa8.5□□□□□ -1.05
LIMS1-204ENST00000409441 C7orf33Q8WU49 177 aa8.5□□□□□ -1.05
LIMS1-204ENST00000409441 PKHD1P08F94 4074 aa8.5□□□□□ -1.05
LIMS1-204ENST00000409441 LOC110117498A0A087WWA1 95 aa8.49□□□□□ -1.05
LIMS1-204ENST00000409441 RBM3P98179 157 aaKnown RBP8.49□□□□□ -1.05
LIMS1-204ENST00000409441 Q6ZSA8 131 aa8.49□□□□□ -1.05
LIMS1-204ENST00000409441 LINC00474Q9P2X8 69 aa8.49□□□□□ -1.05
LIMS1-204ENST00000409441 PRYO14603 147 aa8.48□□□□□ -1.05
LIMS1-204ENST00000409441 PDE6GP18545 87 aa8.48□□□□□ -1.05
LIMS1-204ENST00000409441 NDUFV3P56181 108 aaKnown RBP8.48□□□□□ -1.05
LIMS1-204ENST00000409441 LAMTOR3Q9UHA4 124 aa8.48□□□□□ -1.05
LIMS1-204ENST00000409441 DNAH5Q8TE73 4624 aa8.48□□□□□ -1.05
LIMS1-204ENST00000409441 EPPK1P58107 5090 aaKnown RBP8.48□□□□□ -1.05
LIMS1-204ENST00000409441 Q6JHZ5 121 aa8.47□□□□□ -1.05
LIMS1-204ENST00000409441 SPACA4Q8TDM5 124 aa8.47□□□□□ -1.05
LIMS1-204ENST00000409441 LINC00846Q9NV44 126 aa8.47□□□□□ -1.05
LIMS1-204ENST00000409441 ANAPC13Q9BS18 74 aa8.47□□□□□ -1.05
LIMS1-204ENST00000409441 Q6ZQT0 140 aa8.45□□□□□ -1.06
LIMS1-204ENST00000409441 IGLV1-50A0A075B6I6 118 aa8.44□□□□□ -1.06
LIMS1-204ENST00000409441 DSCR8Q96T75 97 aa8.44□□□□□ -1.06
LIMS1-204ENST00000409441 A0A1W2PNN7 141 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 SPRR1AP35321 89 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 HAMPP81172 84 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 SCXQ7RTU7 201 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 CIRBP-AS1Q8TBR5 109 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 DYNC1H1Q14204 4646 aaKnown RBP8.43□□□□□ -1.06
LIMS1-204ENST00000409441 FAM168BA1KXE4 195 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 ATP5EP2Q5VTU8 51 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 DHRS4-AS1Q9P1J3 65 aa8.43□□□□□ -1.06
LIMS1-204ENST00000409441 MRPL55Q7Z7F7 128 aaKnown RBP8.42□□□□□ -1.06
LIMS1-204ENST00000409441 PLAC8Q9NZF1 115 aa8.42□□□□□ -1.06
LIMS1-204ENST00000409441 LRP1BQ9NZR2 4599 aa8.42□□□□□ -1.06
LIMS1-204ENST00000409441 KRTAP4-16G5E9R7 235 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms