RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 JMJD7-PLA2G4BH0Y9G9 81 aa12.13□□□□□ -0.47
USP39-202ENST00000409025 C14orf132Q9NPU4 83 aa12.13□□□□□ -0.47
USP39-202ENST00000409025 PKIGQ9Y2B9 76 aa12.13□□□□□ -0.47
USP39-202ENST00000409025 TENM2Q9NT68 2774 aa12.12□□□□□ -0.47
USP39-202ENST00000409025 DNAH10Q8IVF4 4471 aa12.12□□□□□ -0.47
USP39-202ENST00000409025 GHRHP01286 108 aa12.11□□□□□ -0.47
USP39-202ENST00000409025 C9orf163Q8N9P6 203 aa12.11□□□□□ -0.47
USP39-202ENST00000409025 XGP55808 180 aa12.1□□□□□ -0.47
USP39-202ENST00000409025 Q6ZR54 194 aa12.1□□□□□ -0.47
USP39-202ENST00000409025 GAGE2AQ6NT46 116 aa12.09□□□□□ -0.47
USP39-202ENST00000409025 VPS13DQ5THJ4 4388 aa12.09□□□□□ -0.47
USP39-202ENST00000409025 A0A1B0GV72 72 aa12.09□□□□□ -0.47
USP39-202ENST00000409025 FBN3Q75N90 2809 aa12.09□□□□□ -0.47
USP39-202ENST00000409025 WWC2-AS2Q96NR7 200 aa12.08□□□□□ -0.48
USP39-202ENST00000409025 SPRR1AP35321 89 aa12.07□□□□□ -0.48
USP39-202ENST00000409025 ETDCA0A1B0GVM5 59 aa12.07□□□□□ -0.48
USP39-202ENST00000409025 MT-ATP8P03928 68 aa12.07□□□□□ -0.48
USP39-202ENST00000409025 LAMTOR3Q9UHA4 124 aa12.07□□□□□ -0.48
USP39-202ENST00000409025 A0A1W2PNN7 141 aa12.06□□□□□ -0.48
USP39-202ENST00000409025 A0A087WTM6 91 aa12.05□□□□□ -0.48
USP39-202ENST00000409025 KRTAP4-16G5E9R7 235 aaPredicted RBP12.05□□□□□ -0.48
USP39-202ENST00000409025 B5MCH6 92 aa12.05□□□□□ -0.48
USP39-202ENST00000409025 Q6ZRX8 168 aa12.05□□□□□ -0.48
USP39-202ENST00000409025 LY6G6CO95867 125 aa12.04□□□□□ -0.48
USP39-202ENST00000409025 DHRS4-AS1Q9P1J3 65 aa12.04□□□□□ -0.48
USP39-202ENST00000409025 CHTF8P0CG12 524 aa12.03□□□□□ -0.48
USP39-202ENST00000409025 SDIM1Q6ZPB5 146 aa12.03□□□□□ -0.48
USP39-202ENST00000409025 REG3GQ6UW15 175 aa12.03□□□□□ -0.48
USP39-202ENST00000409025 RBM3P98179 157 aaKnown RBP12.02□□□□□ -0.49
USP39-202ENST00000409025 LINC00474Q9P2X8 69 aa12.02□□□□□ -0.49
USP39-202ENST00000409025 CCKP06307 115 aa12.01□□□□□ -0.49
USP39-202ENST00000409025 PCP4P48539 62 aa12.01□□□□□ -0.49
USP39-202ENST00000409025 C1orf134Q5TEV5 83 aa12.01□□□□□ -0.49
USP39-202ENST00000409025 SCGB1A1P11684 91 aa11.99□□□□□ -0.49
USP39-202ENST00000409025 LINC00476Q8WZB0 136 aa11.99□□□□□ -0.49
USP39-202ENST00000409025 Q9BRP9 147 aa11.98□□□□□ -0.49
USP39-202ENST00000409025 NDUFV3P56181 108 aaKnown RBP11.97□□□□□ -0.49
USP39-202ENST00000409025 DSCR8Q96T75 97 aa11.96□□□□□ -0.49
USP39-202ENST00000409025 LOC110117498A0A087WWA1 95 aa11.96□□□□□ -0.5
USP39-202ENST00000409025 PHF5AQ7RTV0 110 aaKnown RBP11.96□□□□□ -0.5
USP39-202ENST00000409025 SMCR5Q8TEV8 140 aa11.96□□□□□ -0.5
USP39-202ENST00000409025 UBE2BP63146 152 aa11.95□□□□□ -0.5
USP39-202ENST00000409025 TGP01266 2768 aa11.95□□□□□ -0.5
USP39-202ENST00000409025 LINC00643Q86TS7 51 aa11.94□□□□□ -0.5
USP39-202ENST00000409025 DPH3Q96FX2 82 aa11.94□□□□□ -0.5
USP39-202ENST00000409025 C3orf84H3BNL1 204 aa11.94□□□□□ -0.5
USP39-202ENST00000409025 RTL8CO15255 209 aa11.94□□□□□ -0.5
USP39-202ENST00000409025 PDE6GP18545 87 aa11.94□□□□□ -0.5
USP39-202ENST00000409025 Q6ZQT0 140 aa11.94□□□□□ -0.5
USP39-202ENST00000409025 DEFB105AQ8NG35 78 aa11.94□□□□□ -0.5
USP39-202ENST00000409025 LINC00846Q9NV44 126 aa11.92□□□□□ -0.5
USP39-202ENST00000409025 PANO1I0J062 215 aa11.92□□□□□ -0.5
USP39-202ENST00000409025 FAM19A1Q7Z5A9 133 aa11.92□□□□□ -0.5
USP39-202ENST00000409025 Q8N377 158 aa11.91□□□□□ -0.5
USP39-202ENST00000409025 SPACA4Q8TDM5 124 aa11.91□□□□□ -0.5
USP39-202ENST00000409025 LINC01547P58512 204 aaPredicted RBP11.9□□□□□ -0.51
USP39-202ENST00000409025 ERC2-IT1O76042 136 aa11.89□□□□□ -0.51
USP39-202ENST00000409025 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.89□□□□□ -0.51
USP39-202ENST00000409025 TRBV7-4A0A0J9YYF1 115 aa11.88□□□□□ -0.51
USP39-202ENST00000409025 FUSP35637 526 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP39-202ENST00000409025 KMT2AQ03164 3969 aa11.88□□□□□ -0.51
USP39-202ENST00000409025 IGLV5-48A0A075B6I7 105 aa11.88□□□□□ -0.51
USP39-202ENST00000409025 Q6Q795 121 aa11.88□□□□□ -0.51
USP39-202ENST00000409025 ST20-AS1Q8NBB2 130 aa11.88□□□□□ -0.51
USP39-202ENST00000409025 IGLV5-52A0A0A0MRZ9 124 aa11.87□□□□□ -0.51
USP39-202ENST00000409025 PRLHP81277 87 aa11.87□□□□□ -0.51
USP39-202ENST00000409025 KRTAP11-1Q8IUC1 163 aa11.87□□□□□ -0.51
USP39-202ENST00000409025 C21orf62-AS1Q17RA5 79 aa11.86□□□□□ -0.51
USP39-202ENST00000409025 TRBV7-7A0A0K0K1E9 115 aa11.85□□□□□ -0.51
USP39-202ENST00000409025 EPM2AB3EWF7 344 aa11.85□□□□□ -0.51
USP39-202ENST00000409025 DNAH6Q9C0G6 4158 aa11.84□□□□□ -0.51
USP39-202ENST00000409025 TNP2Q05952 138 aa11.84□□□□□ -0.51
USP39-202ENST00000409025 H0Y9J4 135 aa11.82□□□□□ -0.52
USP39-202ENST00000409025 HIGD2AQ9BW72 106 aa11.82□□□□□ -0.52
USP39-202ENST00000409025 IMUPQ9GZP8 106 aa11.82□□□□□ -0.52
USP39-202ENST00000409025 Q6JHZ5 121 aa11.82□□□□□ -0.52
USP39-202ENST00000409025 UBL5Q9BZL1 73 aa11.81□□□□□ -0.52
USP39-202ENST00000409025 ALMS1Q8TCU4 4167 aa11.8□□□□□ -0.52
USP39-202ENST00000409025 C3orf22Q8N5N4 141 aa11.8□□□□□ -0.52
USP39-202ENST00000409025 UBE2AP49459 152 aa11.8□□□□□ -0.52
USP39-202ENST00000409025 DNAH2Q9P225 4427 aa11.79□□□□□ -0.52
USP39-202ENST00000409025 BCE1O60756 84 aa11.78□□□□□ -0.52
USP39-202ENST00000409025 PLAC8Q9NZF1 115 aa11.77□□□□□ -0.53
USP39-202ENST00000409025 IGKV3D-7A0A0C4DH55 119 aa11.76□□□□□ -0.53
USP39-202ENST00000409025 DNAH17Q9UFH2 4485 aa11.75□□□□□ -0.53
USP39-202ENST00000409025 HECTD4Q9Y4D8 3996 aa11.74□□□□□ -0.53
USP39-202ENST00000409025 ATP5EP2Q5VTU8 51 aa11.74□□□□□ -0.53
USP39-202ENST00000409025 SMIM29Q86T20 159 aa11.74□□□□□ -0.53
USP39-202ENST00000409025 F8WEM9 126 aa11.73□□□□□ -0.53
USP39-202ENST00000409025 C1orf137Q5JT78 98 aa11.72□□□□□ -0.53
USP39-202ENST00000409025 Q6ZVQ6 151 aa11.71□□□□□ -0.53
USP39-202ENST00000409025 KRTAP13-1Q8IUC0 172 aa11.71□□□□□ -0.53
USP39-202ENST00000409025 KRTAP10-2P60368 255 aa11.7□□□□□ -0.54
USP39-202ENST00000409025 SPRR1BP22528 89 aa11.68□□□□□ -0.54
USP39-202ENST00000409025 ANAPC13Q9BS18 74 aa11.66□□□□□ -0.54
USP39-202ENST00000409025 PSORS1C2Q9UIG4 136 aa11.66□□□□□ -0.54
USP39-202ENST00000409025 FAM236AA0A1B0GUQ0 79 aa11.66□□□□□ -0.54
USP39-202ENST00000409025 FAM236BA0A1B0GV22 79 aa11.66□□□□□ -0.54
USP39-202ENST00000409025 A0A1B0GW54 56 aa11.66□□□□□ -0.54
USP39-202ENST00000409025 HAMPP81172 84 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms