RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 IGLV8-61A0A075B6I0 122 aa8.07□□□□□ -1.12
CCDC88B-201ENST00000301897 NDUFC2O95298 119 aa8.07□□□□□ -1.12
CCDC88B-201ENST00000301897 IGLV6-57P01721 117 aa8.07□□□□□ -1.12
CCDC88B-201ENST00000301897 PCOTHQ58A44 107 aa8.07□□□□□ -1.12
CCDC88B-201ENST00000301897 CBY1Q9Y3M2 126 aa8.07□□□□□ -1.12
CCDC88B-201ENST00000301897 SLC25A34Q6PIV7 304 aa8.06□□□□□ -1.12
CCDC88B-201ENST00000301897 TRAV23DV6A0A075B6W5 121 aa8.05□□□□□ -1.12
CCDC88B-201ENST00000301897 LEPROTO15243 131 aa8.05□□□□□ -1.12
CCDC88B-201ENST00000301897 HINT1P49773 126 aaPredicted RBP8.05□□□□□ -1.12
CCDC88B-201ENST00000301897 ZNF73O43830 326 aaPredicted RBP8.04□□□□□ -1.12
CCDC88B-201ENST00000301897 NMUP48645 174 aa8.04□□□□□ -1.12
CCDC88B-201ENST00000301897 TSPEAR-AS2P59090 65 aa8.04□□□□□ -1.12
CCDC88B-201ENST00000301897 HSPB8Q9UJY1 196 aa8.03□□□□□ -1.12
CCDC88B-201ENST00000301897 HIST1H2BKO60814 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BJP06899 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 FABP4P15090 132 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BOP23527 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BBP33778 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BDP58876 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BCP62807 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST2H2BEQ16778 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BHQ93079 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BNQ99877 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 HIST1H2BMQ99879 126 aa8.02□□□□□ -1.13
CCDC88B-201ENST00000301897 H0Y8G0 127 aa8.01□□□□□ -1.13
CCDC88B-201ENST00000301897 J3QQQ9 107 aa8.01□□□□□ -1.13
CCDC88B-201ENST00000301897 LORP23490 312 aaPredicted RBP8.01□□□□□ -1.13
CCDC88B-201ENST00000301897 PLNP26678 52 aa8.01□□□□□ -1.13
CCDC88B-201ENST00000301897 HERVK_113P61574 105 aa8.01□□□□□ -1.13
CCDC88B-201ENST00000301897 C9orf92A6NGG3 77 aa8□□□□□ -1.13
CCDC88B-201ENST00000301897 SPRR1BP22528 89 aa8□□□□□ -1.13
CCDC88B-201ENST00000301897 KRTAP10-6P60371 365 aaPredicted RBP8□□□□□ -1.13
CCDC88B-201ENST00000301897 ST20-AS1Q8NBB2 130 aa8□□□□□ -1.13
CCDC88B-201ENST00000301897 DHRS4-AS1Q9P1J3 65 aa7.99□□□□□ -1.13
CCDC88B-201ENST00000301897 LAMTOR3Q9UHA4 124 aa7.99□□□□□ -1.13
CCDC88B-201ENST00000301897 M0R2T5 61 aa7.98□□□□□ -1.13
CCDC88B-201ENST00000301897 DPM2O94777 84 aa7.98□□□□□ -1.13
CCDC88B-201ENST00000301897 LGALS3P17931 250 aaKnown RBP7.98□□□□□ -1.13
CCDC88B-201ENST00000301897 PMCHL2Q9BQD1 86 aa7.98□□□□□ -1.13
CCDC88B-201ENST00000301897 IGKCP01834 107 aa7.97□□□□□ -1.13
CCDC88B-201ENST00000301897 CD164Q04900 197 aa7.97□□□□□ -1.13
CCDC88B-201ENST00000301897 HRCT1Q6UXD1 115 aa7.97□□□□□ -1.13
CCDC88B-201ENST00000301897 COA6Q5JTJ3 125 aaKnown RBP7.96□□□□□ -1.14
CCDC88B-201ENST00000301897 SOSTDC1Q6X4U4 206 aa7.96□□□□□ -1.14
CCDC88B-201ENST00000301897 SYS1-DBNDD2H3BUS1 97 aa7.95□□□□□ -1.14
CCDC88B-201ENST00000301897 EIF4EBP3O60516 100 aaPredicted RBP7.95□□□□□ -1.14
CCDC88B-201ENST00000301897 ADAMTSL4-AS1Q5T5F5 129 aa7.94□□□□□ -1.14
CCDC88B-201ENST00000301897 Q5XG85 94 aa7.93□□□□□ -1.14
CCDC88B-201ENST00000301897 COX6B2Q6YFQ2 88 aa7.93□□□□□ -1.14
CCDC88B-201ENST00000301897 A0A0J9YXY3 114 aa7.92□□□□□ -1.14
CCDC88B-201ENST00000301897 E9PLD3 99 aa7.92□□□□□ -1.14
CCDC88B-201ENST00000301897 NPC2P61916 151 aa7.92□□□□□ -1.14
CCDC88B-201ENST00000301897 LINC01545Q5VT33 79 aa7.92□□□□□ -1.14
CCDC88B-201ENST00000301897 PRO1933Q9H354 126 aa7.92□□□□□ -1.14
CCDC88B-201ENST00000301897 H7C2G1 150 aa7.91□□□□□ -1.14
CCDC88B-201ENST00000301897 PET117Q6UWS5 81 aa7.91□□□□□ -1.14
CCDC88B-201ENST00000301897 OR13C6PQ8NH95 151 aa7.91□□□□□ -1.14
CCDC88B-201ENST00000301897 SPANXCQ9NY87 97 aa7.91□□□□□ -1.14
CCDC88B-201ENST00000301897 C3orf79P0CE67 100 aa7.89□□□□□ -1.15
CCDC88B-201ENST00000301897 RPL37P61927 97 aaKnown RBP7.89□□□□□ -1.15
CCDC88B-201ENST00000301897 TAL2Q16559 108 aa7.89□□□□□ -1.15
CCDC88B-201ENST00000301897 SPANXDQ9BXN6 97 aa7.89□□□□□ -1.15
CCDC88B-201ENST00000301897 TEX49A0A1B0GTD5 131 aa7.88□□□□□ -1.15
CCDC88B-201ENST00000301897 AKR1D1P51857 326 aa7.88□□□□□ -1.15
CCDC88B-201ENST00000301897 ELOF1P60002 83 aaKnown RBP7.88□□□□□ -1.15
CCDC88B-201ENST00000301897 FLGP20930 4061 aaPredicted RBP7.88□□□□□ -1.15
CCDC88B-201ENST00000301897 COX7BP24311 80 aa7.87□□□□□ -1.15
CCDC88B-201ENST00000301897 Q1RN00 199 aa7.87□□□□□ -1.15
CCDC88B-201ENST00000301897 C1orf195Q5TG92 126 aa7.87□□□□□ -1.15
CCDC88B-201ENST00000301897 LINC00308Q8TCZ7 52 aa7.87□□□□□ -1.15
CCDC88B-201ENST00000301897 TIMM17BO60830 172 aa7.86□□□□□ -1.15
CCDC88B-201ENST00000301897 LINC00518Q8N0U6 118 aa7.86□□□□□ -1.15
CCDC88B-201ENST00000301897 LITAFQ99732 161 aa7.86□□□□□ -1.15
CCDC88B-201ENST00000301897 DEFB105AQ8NG35 78 aa7.85□□□□□ -1.15
CCDC88B-201ENST00000301897 S100A1P23297 94 aa7.84□□□□□ -1.15
CCDC88B-201ENST00000301897 TRBV7-6A0A0J9YX20 115 aa7.83□□□□□ -1.16
CCDC88B-201ENST00000301897 C6orf99Q4VX62 202 aa7.83□□□□□ -1.16
CCDC88B-201ENST00000301897 TCL1BO95988 128 aa7.82□□□□□ -1.16
CCDC88B-201ENST00000301897 KRTDAPP60985 99 aa7.82□□□□□ -1.16
CCDC88B-201ENST00000301897 SMIM29Q86T20 159 aa7.82□□□□□ -1.16
CCDC88B-201ENST00000301897 TTTY13Q9BZ97 58 aa7.8□□□□□ -1.16
CCDC88B-201ENST00000301897 A0A1B0GWB2 263 aa7.79□□□□□ -1.16
CCDC88B-201ENST00000301897 IGLV5-48A0A075B6I7 105 aa7.78□□□□□ -1.16
CCDC88B-201ENST00000301897 ZNF815PA8K554 130 aa7.78□□□□□ -1.16
CCDC88B-201ENST00000301897 ANKRD39Q53RE8 183 aa7.77□□□□□ -1.17
CCDC88B-201ENST00000301897 HIST3H2BBQ8N257 126 aa7.77□□□□□ -1.17
CCDC88B-201ENST00000301897 COPS9Q8WXC6 57 aa7.77□□□□□ -1.17
CCDC88B-201ENST00000301897 C20orf202A1L168 122 aa7.75□□□□□ -1.17
CCDC88B-201ENST00000301897 A4D1N5 150 aa7.75□□□□□ -1.17
CCDC88B-201ENST00000301897 HIST1H2BLQ99880 126 aa7.75□□□□□ -1.17
CCDC88B-201ENST00000301897 NHP2Q9NX24 153 aaKnown RBP7.75□□□□□ -1.17
CCDC88B-201ENST00000301897 ATOH7Q8N100 152 aa7.74□□□□□ -1.17
CCDC88B-201ENST00000301897 A0A0G2JQZ4 141 aa7.73□□□□□ -1.17
CCDC88B-201ENST00000301897 KRTAP9-7A8MTY7 169 aa7.73□□□□□ -1.17
CCDC88B-201ENST00000301897 CFC1P0CG37 223 aa7.73□□□□□ -1.17
CCDC88B-201ENST00000301897 Q6Q795 121 aa7.72□□□□□ -1.17
CCDC88B-201ENST00000301897 ATP11AUNQ6ZP68 121 aa7.72□□□□□ -1.17
CCDC88B-201ENST00000301897 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.71□□□□□ -1.18
CCDC88B-201ENST00000301897 F8WEM9 126 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms