RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 TRBV7-6A0A0J9YX20 115 aa11.59□□□□□ -0.55
VIM-201ENST00000224237 KCNQ1DNQ9H478 68 aa11.59□□□□□ -0.55
VIM-201ENST00000224237 MRPL55Q7Z7F7 128 aaKnown RBP11.58□□□□□ -0.56
VIM-201ENST00000224237 LINC00575Q6W349 94 aa11.57□□□□□ -0.56
VIM-201ENST00000224237 FAM240AA0A1B0GVK7 77 aa11.57□□□□□ -0.56
VIM-201ENST00000224237 FUSP35637 526 aaKnown RBP eCLIP11.57□□□□□ -0.56
VIM-201ENST00000224237 HYDINQ4G0P3 5121 aa11.57□□□□□ -0.56
VIM-201ENST00000224237 COX7BP24311 80 aa11.56□□□□□ -0.56
VIM-201ENST00000224237 ELOF1P60002 83 aaKnown RBP11.56□□□□□ -0.56
VIM-201ENST00000224237 SDIM1Q6ZPB5 146 aa11.56□□□□□ -0.56
VIM-201ENST00000224237 LINC00167Q96N53 147 aa11.56□□□□□ -0.56
VIM-201ENST00000224237 LINC00474Q9P2X8 69 aa11.56□□□□□ -0.56
VIM-201ENST00000224237 IGLV1-50A0A075B6I6 118 aa11.55□□□□□ -0.56
VIM-201ENST00000224237 XGP55808 180 aa11.55□□□□□ -0.56
VIM-201ENST00000224237 PRYO14603 147 aa11.54□□□□□ -0.56
VIM-201ENST00000224237 DNAH17Q9UFH2 4485 aa11.54□□□□□ -0.56
VIM-201ENST00000224237 hADV29S1A0JD25 119 aa11.53□□□□□ -0.56
VIM-201ENST00000224237 RPL37AP8A6NKH3 93 aa11.53□□□□□ -0.56
VIM-201ENST00000224237 CHTF8P0CG12 524 aa11.53□□□□□ -0.56
VIM-201ENST00000224237 ORMDL1Q9P0S3 153 aa11.53□□□□□ -0.56
VIM-201ENST00000224237 A0A1W2PNN7 141 aa11.53□□□□□ -0.56
VIM-201ENST00000224237 MT-ATP8P03928 68 aa11.53□□□□□ -0.56
VIM-201ENST00000224237 ACYP1P07311 99 aa11.53□□□□□ -0.56
VIM-201ENST00000224237 RTL8CO15255 209 aa11.52□□□□□ -0.57
VIM-201ENST00000224237 INAFM2P0DMQ5 153 aa11.51□□□□□ -0.57
VIM-201ENST00000224237 TNP2Q05952 138 aa11.5□□□□□ -0.57
VIM-201ENST00000224237 FRAS1Q86XX4 4008 aa11.5□□□□□ -0.57
VIM-201ENST00000224237 SPRR1AP35321 89 aa11.49□□□□□ -0.57
VIM-201ENST00000224237 LINC00528Q8N1L1 170 aa11.49□□□□□ -0.57
VIM-201ENST00000224237 HECTD4Q9Y4D8 3996 aa11.49□□□□□ -0.57
VIM-201ENST00000224237 SACSQ9NZJ4 4579 aa11.49□□□□□ -0.57
VIM-201ENST00000224237 IGLV5-52A0A0A0MRZ9 124 aa11.47□□□□□ -0.57
VIM-201ENST00000224237 TMEM256-PLSCR3K7ERE1 68 aa11.46□□□□□ -0.57
VIM-201ENST00000224237 SPACA4Q8TDM5 124 aa11.46□□□□□ -0.57
VIM-201ENST00000224237 KRTAP4-16G5E9R7 235 aaPredicted RBP11.46□□□□□ -0.58
VIM-201ENST00000224237 ETDCA0A1B0GVM5 59 aa11.45□□□□□ -0.58
VIM-201ENST00000224237 REG3GQ6UW15 175 aa11.45□□□□□ -0.58
VIM-201ENST00000224237 OBSCN-AS1Q96MR7 158 aa11.45□□□□□ -0.58
VIM-201ENST00000224237 PANO1I0J062 215 aa11.44□□□□□ -0.58
VIM-201ENST00000224237 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.44□□□□□ -0.58
VIM-201ENST00000224237 Q6ZQY7 126 aa11.44□□□□□ -0.58
VIM-201ENST00000224237 Q6ZRX8 168 aa11.44□□□□□ -0.58
VIM-201ENST00000224237 B5MCH6 92 aa11.43□□□□□ -0.58
VIM-201ENST00000224237 H3BQ85 93 aa11.43□□□□□ -0.58
VIM-201ENST00000224237 DPH3Q96FX2 82 aa11.43□□□□□ -0.58
VIM-201ENST00000224237 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.43□□□□□ -0.58
VIM-201ENST00000224237 GHRHP01286 108 aa11.42□□□□□ -0.58
VIM-201ENST00000224237 PHF5AQ7RTV0 110 aaKnown RBP11.42□□□□□ -0.58
VIM-201ENST00000224237 LCE6AA0A183 80 aa11.41□□□□□ -0.58
VIM-201ENST00000224237 UBE2BP63146 152 aa11.41□□□□□ -0.58
VIM-201ENST00000224237 DHRS4-AS1Q9P1J3 65 aa11.41□□□□□ -0.58
VIM-201ENST00000224237 FAT2Q9NYQ8 4349 aa11.41□□□□□ -0.58
VIM-201ENST00000224237 Q6Q795 121 aa11.4□□□□□ -0.58
VIM-201ENST00000224237 DNAH11Q96DT5 4516 aa11.4□□□□□ -0.58
VIM-201ENST00000224237 EPM2AB3EWF7 344 aa11.4□□□□□ -0.59
VIM-201ENST00000224237 JMJD7-PLA2G4BH0Y9G9 81 aa11.38□□□□□ -0.59
VIM-201ENST00000224237 KRTAP10-2P60368 255 aa11.38□□□□□ -0.59
VIM-201ENST00000224237 Q9BRP9 147 aa11.38□□□□□ -0.59
VIM-201ENST00000224237 GAGE2AQ6NT46 116 aa11.36□□□□□ -0.59
VIM-201ENST00000224237 LINC00643Q86TS7 51 aa11.35□□□□□ -0.59
VIM-201ENST00000224237 C14orf132Q9NPU4 83 aa11.35□□□□□ -0.59
VIM-201ENST00000224237 FAM19A1Q7Z5A9 133 aa11.34□□□□□ -0.59
VIM-201ENST00000224237 KRTAP11-1Q8IUC1 163 aa11.34□□□□□ -0.59
VIM-201ENST00000224237 PLAC8Q9NZF1 115 aa11.34□□□□□ -0.59
VIM-201ENST00000224237 PKD1P98161 4303 aa11.32□□□□□ -0.6
VIM-201ENST00000224237 LAMTOR3Q9UHA4 124 aa11.32□□□□□ -0.6
VIM-201ENST00000224237 DNAH5Q8TE73 4624 aa11.32□□□□□ -0.6
VIM-201ENST00000224237 A0A1B0GV72 72 aa11.32□□□□□ -0.6
VIM-201ENST00000224237 IMUPQ9GZP8 106 aa11.32□□□□□ -0.6
VIM-201ENST00000224237 TRBV7-7A0A0K0K1E9 115 aa11.31□□□□□ -0.6
VIM-201ENST00000224237 PRLHP81277 87 aa11.3□□□□□ -0.6
VIM-201ENST00000224237 KMT2CQ8NEZ4 4911 aaKnown RBP11.3□□□□□ -0.6
VIM-201ENST00000224237 CCKP06307 115 aa11.29□□□□□ -0.6
VIM-201ENST00000224237 SMCR5Q8TEV8 140 aa11.29□□□□□ -0.6
VIM-201ENST00000224237 H0Y9J4 135 aa11.29□□□□□ -0.6
VIM-201ENST00000224237 RBM3P98179 157 aaKnown RBP11.28□□□□□ -0.6
VIM-201ENST00000224237 BCE1O60756 84 aa11.27□□□□□ -0.61
VIM-201ENST00000224237 ERC2-IT1O76042 136 aa11.27□□□□□ -0.61
VIM-201ENST00000224237 NDUFV3P56181 108 aaKnown RBP11.26□□□□□ -0.61
VIM-201ENST00000224237 LINC01547P58512 204 aaPredicted RBP11.26□□□□□ -0.61
VIM-201ENST00000224237 DEFB105AQ8NG35 78 aa11.26□□□□□ -0.61
VIM-201ENST00000224237 RYR2Q92736 4967 aa11.26□□□□□ -0.61
VIM-201ENST00000224237 DNAH8Q96JB1 4490 aa11.25□□□□□ -0.61
VIM-201ENST00000224237 IGLV5-48A0A075B6I7 105 aa11.25□□□□□ -0.61
VIM-201ENST00000224237 LINC00336Q6ZUF6 198 aa11.25□□□□□ -0.61
VIM-201ENST00000224237 Q8N377 158 aa11.25□□□□□ -0.61
VIM-201ENST00000224237 UBE2AP49459 152 aa11.25□□□□□ -0.61
VIM-201ENST00000224237 HIGD2AQ9BW72 106 aa11.25□□□□□ -0.61
VIM-201ENST00000224237 ST20-AS1Q8NBB2 130 aa11.24□□□□□ -0.61
VIM-201ENST00000224237 DSCR8Q96T75 97 aa11.23□□□□□ -0.61
VIM-201ENST00000224237 LINC00846Q9NV44 126 aa11.23□□□□□ -0.61
VIM-201ENST00000224237 FAM30AQ9NZY2 134 aa11.23□□□□□ -0.61
VIM-201ENST00000224237 KRTAP10-1P60331 282 aa11.22□□□□□ -0.61
VIM-201ENST00000224237 LOC110117498A0A087WWA1 95 aa11.21□□□□□ -0.61
VIM-201ENST00000224237 Q6ZSA8 131 aa11.21□□□□□ -0.61
VIM-201ENST00000224237 ANAPC13Q9BS18 74 aa11.21□□□□□ -0.61
VIM-201ENST00000224237 PDE6GP18545 87 aa11.21□□□□□ -0.62
VIM-201ENST00000224237 KRTAP13-1Q8IUC0 172 aa11.2□□□□□ -0.62
VIM-201ENST00000224237 PSORS1C2Q9UIG4 136 aa11.19□□□□□ -0.62
VIM-201ENST00000224237 Q6ZQT0 140 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms