RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 H3BQ85 93 aa7.22□□□□□ -1.25
ZNF540-208ENST00000589857 XGP55808 180 aa7.22□□□□□ -1.25
ZNF540-208ENST00000589857 DNAH9Q9NYC9 4486 aa7.22□□□□□ -1.25
ZNF540-208ENST00000589857 BIRC6Q9NR09 4857 aa7.21□□□□□ -1.25
ZNF540-208ENST00000589857 IGLV10-54A0A075B6I4 117 aa7.21□□□□□ -1.26
ZNF540-208ENST00000589857 MT-ATP8P03928 68 aa7.21□□□□□ -1.26
ZNF540-208ENST00000589857 GAGE2BQ13066 116 aa7.21□□□□□ -1.26
ZNF540-208ENST00000589857 GAGE2EQ4V326 116 aa7.21□□□□□ -1.26
ZNF540-208ENST00000589857 GAGE2DQ9UEU5 116 aa7.21□□□□□ -1.26
ZNF540-208ENST00000589857 KLK12Q9UKR0 248 aa7.21□□□□□ -1.26
ZNF540-208ENST00000589857 ORMDL1Q9P0S3 153 aa7.2□□□□□ -1.26
ZNF540-208ENST00000589857 TENM2Q9NT68 2774 aa7.2□□□□□ -1.26
ZNF540-208ENST00000589857 GHRHP01286 108 aa7.19□□□□□ -1.26
ZNF540-208ENST00000589857 S100A7L2Q5SY68 101 aa7.19□□□□□ -1.26
ZNF540-208ENST00000589857 STAB2Q8WWQ8 2551 aa7.19□□□□□ -1.26
ZNF540-208ENST00000589857 ENHOQ6UWT2 76 aa7.18□□□□□ -1.26
ZNF540-208ENST00000589857 C15orf53Q8NAA6 179 aa7.18□□□□□ -1.26
ZNF540-208ENST00000589857 FAM218AQ96MZ4 157 aa7.18□□□□□ -1.26
ZNF540-208ENST00000589857 TM2D3Q9BRN9 247 aa7.18□□□□□ -1.26
ZNF540-208ENST00000589857 RYR2Q92736 4967 aa7.17□□□□□ -1.26
ZNF540-208ENST00000589857 ZNF561-AS1K7EIQ3 104 aa7.17□□□□□ -1.26
ZNF540-208ENST00000589857 LECT2O14960 151 aa7.17□□□□□ -1.26
ZNF540-208ENST00000589857 C11orf45Q8TAV5 145 aa7.17□□□□□ -1.26
ZNF540-208ENST00000589857 C2orf48Q96LS8 159 aa7.17□□□□□ -1.26
ZNF540-208ENST00000589857 IMUPQ9GZP8 106 aa7.17□□□□□ -1.26
ZNF540-208ENST00000589857 EPPK1P58107 5090 aaKnown RBP7.16□□□□□ -1.26
ZNF540-208ENST00000589857 A0A087WYN8 130 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 DEFB131BA0A096LNP1 70 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 JMJD7-PLA2G4BH0Y9G9 81 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 LINC01556Q5JQF7 62 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 Q6ZTC4 211 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 LINC00643Q86TS7 51 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 LINC00167Q96N53 147 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 C1orf43Q9BWL3 253 aa7.16□□□□□ -1.26
ZNF540-208ENST00000589857 TRAV10A0A0B4J240 114 aa7.15□□□□□ -1.26
ZNF540-208ENST00000589857 TMEM256-PLSCR3K7ERE1 68 aa7.15□□□□□ -1.26
ZNF540-208ENST00000589857 TTC32Q5I0X7 151 aa7.15□□□□□ -1.26
ZNF540-208ENST00000589857 Q9HAA7 133 aa7.15□□□□□ -1.26
ZNF540-208ENST00000589857 UNQ6190/PRO20217Q6UXQ8 127 aa7.14□□□□□ -1.27
ZNF540-208ENST00000589857 Q8N3U1 123 aa7.14□□□□□ -1.27
ZNF540-208ENST00000589857 RETNQ9HD89 108 aa7.14□□□□□ -1.27
ZNF540-208ENST00000589857 TRBV7-7A0A0K0K1E9 115 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 NCR3O14931 201 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 WFDC10BQ8IUB3 73 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 Q8N814 137 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 RMI2Q96E14 147 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 OBSCN-AS1Q96MR7 158 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 CAMK2N2Q96S95 79 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 ANAPC13Q9BS18 74 aa7.13□□□□□ -1.27
ZNF540-208ENST00000589857 TRBV7-6A0A0J9YX20 115 aa7.12□□□□□ -1.27
ZNF540-208ENST00000589857 GAGE2AQ6NT46 116 aa7.12□□□□□ -1.27
ZNF540-208ENST00000589857 IGLV6-57P01721 117 aa7.11□□□□□ -1.27
ZNF540-208ENST00000589857 C9orf116Q5BN46 136 aaPredicted RBP7.11□□□□□ -1.27
ZNF540-208ENST00000589857 C10orf25Q5T742 122 aa7.11□□□□□ -1.27
ZNF540-208ENST00000589857 C6orf223Q8N319 242 aa7.11□□□□□ -1.27
ZNF540-208ENST00000589857 C6orf48Q9UBA6 75 aa7.11□□□□□ -1.27
ZNF540-208ENST00000589857 DNAH10OSP0CZ25 163 aa7.1□□□□□ -1.27
ZNF540-208ENST00000589857 NANOS2P60321 138 aaKnown RBP7.1□□□□□ -1.27
ZNF540-208ENST00000589857 ESRGQ1W209 222 aa7.1□□□□□ -1.27
ZNF540-208ENST00000589857 C6orf99Q4VX62 202 aa7.1□□□□□ -1.27
ZNF540-208ENST00000589857 DIRC1Q969H9 104 aa7.1□□□□□ -1.27
ZNF540-208ENST00000589857 DYNC2H1Q8NCM8 4307 aaKnown RBP7.1□□□□□ -1.27
ZNF540-208ENST00000589857 hADV29S1A0JD25 119 aa7.09□□□□□ -1.27
ZNF540-208ENST00000589857 NDUFC2-KCTD14E9PQ53 114 aa7.09□□□□□ -1.27
ZNF540-208ENST00000589857 M0R378 163 aa7.09□□□□□ -1.27
ZNF540-208ENST00000589857 NDUFV3P56181 108 aaKnown RBP7.09□□□□□ -1.27
ZNF540-208ENST00000589857 LINC00575Q6W349 94 aa7.09□□□□□ -1.27
ZNF540-208ENST00000589857 SDIM1Q6ZPB5 146 aa7.09□□□□□ -1.27
ZNF540-208ENST00000589857 C22orf24Q9Y442 160 aa7.09□□□□□ -1.27
ZNF540-208ENST00000589857 DNAH7Q8WXX0 4024 aa7.09□□□□□ -1.28
ZNF540-208ENST00000589857 IGKV2D-24A0A075B6R9 120 aa7.08□□□□□ -1.28
ZNF540-208ENST00000589857 TRAV23DV6A0A075B6W5 121 aa7.08□□□□□ -1.28
ZNF540-208ENST00000589857 PDE6GP18545 87 aa7.08□□□□□ -1.28
ZNF540-208ENST00000589857 RPL18AQ02543 176 aaKnown RBP7.08□□□□□ -1.28
ZNF540-208ENST00000589857 LYSTQ99698 3801 aa7.07□□□□□ -1.28
ZNF540-208ENST00000589857 LY6G6CO95867 125 aa7.07□□□□□ -1.28
ZNF540-208ENST00000589857 KRTAP26-1Q6PEX3 210 aa7.07□□□□□ -1.28
ZNF540-208ENST00000589857 C14orf132Q9NPU4 83 aa7.07□□□□□ -1.28
ZNF540-208ENST00000589857 SACSQ9NZJ4 4579 aa7.07□□□□□ -1.28
ZNF540-208ENST00000589857 DNAH1Q9P2D7 4330 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 CCKP06307 115 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 COX7BP24311 80 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 PRR3P79522 188 aaKnown RBP7.06□□□□□ -1.28
ZNF540-208ENST00000589857 SYCNQ0VAF6 134 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 HIGD2BQ4VC39 106 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 ATP5EP2Q5VTU8 51 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.06□□□□□ -1.28
ZNF540-208ENST00000589857 C15orf56Q8N910 161 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 KRTAP17-1Q9BYP8 105 aa7.06□□□□□ -1.28
ZNF540-208ENST00000589857 NUPR2A6NF83 97 aa7.05□□□□□ -1.28
ZNF540-208ENST00000589857 SLPIP03973 132 aa7.05□□□□□ -1.28
ZNF540-208ENST00000589857 Q6JHZ5 121 aa7.05□□□□□ -1.28
ZNF540-208ENST00000589857 LINC00476Q8WZB0 136 aa7.05□□□□□ -1.28
ZNF540-208ENST00000589857 TRBV10-3A0A0K0K1G6 114 aa7.04□□□□□ -1.28
ZNF540-208ENST00000589857 ZNF73O43830 326 aaPredicted RBP7.04□□□□□ -1.28
ZNF540-208ENST00000589857 Q6ZRU5 148 aa7.04□□□□□ -1.28
ZNF540-208ENST00000589857 LINC00526Q96FQ7 95 aa7.04□□□□□ -1.28
ZNF540-208ENST00000589857 HUWE1Q7Z6Z7 4374 aaKnown RBP7.04□□□□□ -1.28
ZNF540-208ENST00000589857 TLX1NBP0CAT3 122 aa7.03□□□□□ -1.28
ZNF540-208ENST00000589857 VPREB1P12018 145 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms