RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 RMI2Q96E14 147 aa7.54□□□□□ -1.2
LIG3-204ENST00000585740 TMEM126AQ9H061 195 aa7.54□□□□□ -1.2
LIG3-204ENST00000585740 IGKV2D-24A0A075B6R9 120 aa7.53□□□□□ -1.2
LIG3-204ENST00000585740 C10orf25Q5T742 122 aa7.53□□□□□ -1.2
LIG3-204ENST00000585740 WWC2-AS2Q96NR7 200 aa7.53□□□□□ -1.2
LIG3-204ENST00000585740 CAMK2N2Q96S95 79 aa7.53□□□□□ -1.2
LIG3-204ENST00000585740 UPK3BQ9BT76 320 aa7.53□□□□□ -1.2
LIG3-204ENST00000585740 COL7A1Q02388 2944 aa7.53□□□□□ -1.2
LIG3-204ENST00000585740 HUWE1Q7Z6Z7 4374 aaKnown RBP7.52□□□□□ -1.21
LIG3-204ENST00000585740 C9orf116Q5BN46 136 aaPredicted RBP7.52□□□□□ -1.21
LIG3-204ENST00000585740 B9D2Q9BPU9 175 aa7.52□□□□□ -1.21
LIG3-204ENST00000585740 C6orf48Q9UBA6 75 aa7.52□□□□□ -1.21
LIG3-204ENST00000585740 LINC00588Q9Y4M8 146 aa7.52□□□□□ -1.21
LIG3-204ENST00000585740 A0A1B0GX51 115 aa7.51□□□□□ -1.21
LIG3-204ENST00000585740 C15orf56Q8N910 161 aa7.51□□□□□ -1.21
LIG3-204ENST00000585740 RYR2Q92736 4967 aa7.51□□□□□ -1.21
LIG3-204ENST00000585740 DNAL4O96015 105 aa7.5□□□□□ -1.21
LIG3-204ENST00000585740 HIGD2BQ4VC39 106 aa7.5□□□□□ -1.21
LIG3-204ENST00000585740 LINC00526Q96FQ7 95 aa7.5□□□□□ -1.21
LIG3-204ENST00000585740 SNCGO76070 127 aa7.49□□□□□ -1.21
LIG3-204ENST00000585740 S100A7L2Q5SY68 101 aa7.49□□□□□ -1.21
LIG3-204ENST00000585740 KRTAP17-1Q9BYP8 105 aa7.49□□□□□ -1.21
LIG3-204ENST00000585740 BAALC-AS2P0C853 105 aa7.48□□□□□ -1.21
LIG3-204ENST00000585740 NHLRC4P0CG21 123 aaPredicted RBP7.48□□□□□ -1.21
LIG3-204ENST00000585740 FAM218AQ96MZ4 157 aa7.48□□□□□ -1.21
LIG3-204ENST00000585740 DNAH9Q9NYC9 4486 aa7.48□□□□□ -1.21
LIG3-204ENST00000585740 NCR3O14931 201 aa7.47□□□□□ -1.21
LIG3-204ENST00000585740 SYCNQ0VAF6 134 aa7.47□□□□□ -1.21
LIG3-204ENST00000585740 Q6ZRU5 148 aa7.47□□□□□ -1.21
LIG3-204ENST00000585740 Q9HAA7 133 aa7.47□□□□□ -1.21
LIG3-204ENST00000585740 NDUFC2-KCTD14E9PQ53 114 aa7.46□□□□□ -1.22
LIG3-204ENST00000585740 SIGMAR1Q99720 223 aa7.46□□□□□ -1.22
LIG3-204ENST00000585740 TEX49A0A1B0GTD5 131 aa7.45□□□□□ -1.22
LIG3-204ENST00000585740 PRR3P79522 188 aaKnown RBP7.45□□□□□ -1.22
LIG3-204ENST00000585740 A0A087WYN8 130 aa7.44□□□□□ -1.22
LIG3-204ENST00000585740 LECT2O14960 151 aa7.44□□□□□ -1.22
LIG3-204ENST00000585740 IGLV6-57P01721 117 aa7.44□□□□□ -1.22
LIG3-204ENST00000585740 INAFM2P0DMQ5 153 aa7.44□□□□□ -1.22
LIG3-204ENST00000585740 LINC00167Q96N53 147 aa7.44□□□□□ -1.22
LIG3-204ENST00000585740 FAM240AA0A1B0GVK7 77 aa7.43□□□□□ -1.22
LIG3-204ENST00000585740 M0R378 163 aa7.43□□□□□ -1.22
LIG3-204ENST00000585740 TLX1NBP0CAT3 122 aa7.43□□□□□ -1.22
LIG3-204ENST00000585740 RPL18AQ02543 176 aaKnown RBP7.43□□□□□ -1.22
LIG3-204ENST00000585740 ORMDL1Q9P0S3 153 aa7.43□□□□□ -1.22
LIG3-204ENST00000585740 TENM2Q9NT68 2774 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 H3BQ85 93 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 SCGB1A1P11684 91 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 C6orf99Q4VX62 202 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 UBE2DNLQ8IWF7 75 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 Q8NDZ9 215 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 CDIP1Q9H305 208 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 APLNQ9ULZ1 77 aa7.42□□□□□ -1.22
LIG3-204ENST00000585740 DYNC2H1Q8NCM8 4307 aaKnown RBP7.41□□□□□ -1.22
LIG3-204ENST00000585740 NUPR2A6NF83 97 aa7.41□□□□□ -1.22
LIG3-204ENST00000585740 USP17L23D6RBM5 183 aa7.41□□□□□ -1.22
LIG3-204ENST00000585740 ACYP1P07311 99 aa7.41□□□□□ -1.22
LIG3-204ENST00000585740 VPREB1P12018 145 aa7.41□□□□□ -1.22
LIG3-204ENST00000585740 Q8N814 137 aa7.41□□□□□ -1.22
LIG3-204ENST00000585740 XAGE1AQ9HD64 81 aa7.41□□□□□ -1.22
LIG3-204ENST00000585740 SACSQ9NZJ4 4579 aa7.41□□□□□ -1.22
LIG3-204ENST00000585740 TRAV23DV6A0A075B6W5 121 aa7.4□□□□□ -1.22
LIG3-204ENST00000585740 TRBV7-6A0A0J9YX20 115 aa7.4□□□□□ -1.22
LIG3-204ENST00000585740 C3orf84H3BNL1 204 aa7.4□□□□□ -1.22
LIG3-204ENST00000585740 DIRC1Q969H9 104 aa7.4□□□□□ -1.22
LIG3-204ENST00000585740 PLA2G2DQ9UNK4 145 aa7.4□□□□□ -1.22
LIG3-204ENST00000585740 LINC00575Q6W349 94 aa7.39□□□□□ -1.23
LIG3-204ENST00000585740 TRBV10-3A0A0K0K1G6 114 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 TMEM256-PLSCR3K7ERE1 68 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 GHRHP01286 108 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 PCP4P48539 62 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 GAGE2EQ4V326 116 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 Q6ZRP5 223 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 GAGE2DQ9UEU5 116 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 C22orf24Q9Y442 160 aa7.38□□□□□ -1.23
LIG3-204ENST00000585740 hADV29S1A0JD25 119 aa7.37□□□□□ -1.23
LIG3-204ENST00000585740 C14orf177Q52M58 125 aa7.37□□□□□ -1.23
LIG3-204ENST00000585740 OBSCN-AS1Q96MR7 158 aa7.37□□□□□ -1.23
LIG3-204ENST00000585740 JMJD7-PLA2G4BH0Y9G9 81 aa7.36□□□□□ -1.23
LIG3-204ENST00000585740 ZNF73O43830 326 aaPredicted RBP7.36□□□□□ -1.23
LIG3-204ENST00000585740 COX7BP24311 80 aa7.36□□□□□ -1.23
LIG3-204ENST00000585740 TTC32Q5I0X7 151 aa7.36□□□□□ -1.23
LIG3-204ENST00000585740 CASC10Q5T4H9 136 aa7.36□□□□□ -1.23
LIG3-204ENST00000585740 NKAPP1Q8N9T2 125 aa7.36□□□□□ -1.23
LIG3-204ENST00000585740 DNAH1Q9P2D7 4330 aa7.35□□□□□ -1.23
LIG3-204ENST00000585740 IGLV5-37A0A075B6J1 123 aa7.35□□□□□ -1.23
LIG3-204ENST00000585740 LOC107984640A0A0U1RRK4 108 aa7.35□□□□□ -1.23
LIG3-204ENST00000585740 SLPIP03973 132 aa7.35□□□□□ -1.23
LIG3-204ENST00000585740 XGP55808 180 aa7.34□□□□□ -1.23
LIG3-204ENST00000585740 C9orf129Q5T035 196 aaKnown RBP7.34□□□□□ -1.23
LIG3-204ENST00000585740 LCE6AA0A183 80 aa7.33□□□□□ -1.24
LIG3-204ENST00000585740 PSCAO43653 123 aa7.33□□□□□ -1.24
LIG3-204ENST00000585740 ELOF1P60002 83 aaKnown RBP7.33□□□□□ -1.24
LIG3-204ENST00000585740 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.33□□□□□ -1.24
LIG3-204ENST00000585740 PKIGQ9Y2B9 76 aa7.33□□□□□ -1.24
LIG3-204ENST00000585740 STAB2Q8WWQ8 2551 aa7.32□□□□□ -1.24
LIG3-204ENST00000585740 MT-ATP8P03928 68 aa7.32□□□□□ -1.24
LIG3-204ENST00000585740 HYDINQ4G0P3 5121 aa7.32□□□□□ -1.24
LIG3-204ENST00000585740 CNBPP62633 177 aaKnown RBP7.31□□□□□ -1.24
LIG3-204ENST00000585740 KCNQ1DNQ9H478 68 aa7.31□□□□□ -1.24
LIG3-204ENST00000585740 PRYO14603 147 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms