RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 SEC11AP67812 179 aa5.85□□□□□ -1.47
VPS29-208ENST00000550267 KRTAP19-2Q3LHN2 52 aa5.85□□□□□ -1.47
VPS29-208ENST00000550267 CBLN2Q8IUK8 224 aa5.85□□□□□ -1.47
VPS29-208ENST00000550267 COX7B2Q8TF08 81 aa5.85□□□□□ -1.47
VPS29-208ENST00000550267 M0R378 163 aa5.84□□□□□ -1.47
VPS29-208ENST00000550267 KRTAP5-11Q6L8G4 156 aa5.84□□□□□ -1.47
VPS29-208ENST00000550267 TCTE3Q8IZS6 198 aa5.84□□□□□ -1.47
VPS29-208ENST00000550267 Q8NBF4 154 aa5.84□□□□□ -1.47
VPS29-208ENST00000550267 SPRR4Q96PI1 79 aa5.84□□□□□ -1.47
VPS29-208ENST00000550267 HIGD2AQ9BW72 106 aa5.84□□□□□ -1.47
VPS29-208ENST00000550267 MAP1LC3AQ9H492 121 aa5.84□□□□□ -1.47
VPS29-208ENST00000550267 NPSP0C0P6 89 aa5.83□□□□□ -1.48
VPS29-208ENST00000550267 CFC1BP0CG36 223 aa5.83□□□□□ -1.48
VPS29-208ENST00000550267 KRTAP10-6P60371 365 aaPredicted RBP5.83□□□□□ -1.48
VPS29-208ENST00000550267 PDZD11Q5EBL8 140 aa5.83□□□□□ -1.48
VPS29-208ENST00000550267 Q8N8P6 123 aa5.83□□□□□ -1.48
VPS29-208ENST00000550267 GNB1LQ9BYB4 327 aa5.83□□□□□ -1.48
VPS29-208ENST00000550267 NAT8Q9UHE5 227 aa5.83□□□□□ -1.48
VPS29-208ENST00000550267 VPREB1P12018 145 aa5.82□□□□□ -1.48
VPS29-208ENST00000550267 ORMDL2Q53FV1 153 aa5.82□□□□□ -1.48
VPS29-208ENST00000550267 C9JQL5 133 aa5.81□□□□□ -1.48
VPS29-208ENST00000550267 LAMTOR2Q9Y2Q5 125 aa5.81□□□□□ -1.48
VPS29-208ENST00000550267 A0A1B0GVG6 124 aa5.8□□□□□ -1.48
VPS29-208ENST00000550267 SPINK1P00995 79 aa5.8□□□□□ -1.48
VPS29-208ENST00000550267 SPINK8P0C7L1 97 aa5.8□□□□□ -1.48
VPS29-208ENST00000550267 PFN2P35080 140 aa5.8□□□□□ -1.48
VPS29-208ENST00000550267 PAPPA-AS1Q5QFB9 102 aa5.8□□□□□ -1.48
VPS29-208ENST00000550267 Q8NDZ9 215 aa5.8□□□□□ -1.48
VPS29-208ENST00000550267 TINCRA0A1B0GVN0 87 aa5.79□□□□□ -1.48
VPS29-208ENST00000550267 ATP5L2Q7Z4Y8 100 aa5.79□□□□□ -1.48
VPS29-208ENST00000550267 TIMM17AQ99595 171 aa5.79□□□□□ -1.48
VPS29-208ENST00000550267 NDUFA12Q9UI09 145 aa5.79□□□□□ -1.48
VPS29-208ENST00000550267 IGLV5-45A0A087WSX0 123 aa5.78□□□□□ -1.48
VPS29-208ENST00000550267 ATP5LO75964 103 aa5.78□□□□□ -1.48
VPS29-208ENST00000550267 RAB14P61106 215 aa5.78□□□□□ -1.48
VPS29-208ENST00000550267 RPL24P83731 157 aaKnown RBP5.78□□□□□ -1.48
VPS29-208ENST00000550267 Q8N377 158 aa5.78□□□□□ -1.48
VPS29-208ENST00000550267 SND1-IT1Q9HBX3 110 aa5.78□□□□□ -1.48
VPS29-208ENST00000550267 ZNF706Q9Y5V0 76 aaPredicted RBP5.78□□□□□ -1.48
VPS29-208ENST00000550267 K7EMI3 77 aa5.77□□□□□ -1.49
VPS29-208ENST00000550267 TRIAP1O43715 76 aa5.77□□□□□ -1.49
VPS29-208ENST00000550267 TOMM6Q96B49 74 aa5.77□□□□□ -1.49
VPS29-208ENST00000550267 KRTAP2-2Q9BYT5 123 aa5.77□□□□□ -1.49
VPS29-208ENST00000550267 ADCYAP1P18509 176 aa5.76□□□□□ -1.49
VPS29-208ENST00000550267 NXT2Q9NPJ8 142 aaKnown RBP5.76□□□□□ -1.49
VPS29-208ENST00000550267 IGKV2-30P06310 120 aa5.75□□□□□ -1.49
VPS29-208ENST00000550267 ERASQ7Z444 233 aa5.75□□□□□ -1.49
VPS29-208ENST00000550267 FAM19A2Q8N3H0 131 aa5.75□□□□□ -1.49
VPS29-208ENST00000550267 SCGB3A1Q96QR1 104 aa5.75□□□□□ -1.49
VPS29-208ENST00000550267 ERG28Q9UKR5 140 aa5.75□□□□□ -1.49
VPS29-208ENST00000550267 G0S2P27469 103 aa5.74□□□□□ -1.49
VPS29-208ENST00000550267 PCOTHQ58A44 107 aa5.74□□□□□ -1.49
VPS29-208ENST00000550267 SMCR5Q8TEV8 140 aa5.74□□□□□ -1.49
VPS29-208ENST00000550267 IGLV8-61A0A075B6I0 122 aa5.73□□□□□ -1.49
VPS29-208ENST00000550267 SLC25A20O43772 301 aa5.73□□□□□ -1.49
VPS29-208ENST00000550267 RPS29P62273 56 aaKnown RBP5.73□□□□□ -1.49
VPS29-208ENST00000550267 MOBPQ13875 183 aa5.73□□□□□ -1.49
VPS29-208ENST00000550267 AKAP14Q86UN6 197 aa5.73□□□□□ -1.49
VPS29-208ENST00000550267 ZNF625Q96I27 306 aaPredicted RBP5.73□□□□□ -1.49
VPS29-208ENST00000550267 CST9LQ9H4G1 147 aa5.73□□□□□ -1.49
VPS29-208ENST00000550267 IGLV9-49A0A0B4J1Y8 123 aa5.72□□□□□ -1.49
VPS29-208ENST00000550267 PEA15Q15121 130 aa5.72□□□□□ -1.49
VPS29-208ENST00000550267 LINC00483Q53H64 154 aa5.72□□□□□ -1.49
VPS29-208ENST00000550267 H3BRM9 83 aa5.71□□□□□ -1.5
VPS29-208ENST00000550267 M0R2T5 61 aa5.71□□□□□ -1.5
VPS29-208ENST00000550267 COX17Q14061 63 aa5.71□□□□□ -1.5
VPS29-208ENST00000550267 IGLV5-39A0A0G2JS06 123 aa5.7□□□□□ -1.5
VPS29-208ENST00000550267 PMVKQ15126 192 aa5.7□□□□□ -1.5
VPS29-208ENST00000550267 GAGE2AQ6NT46 116 aa5.7□□□□□ -1.5
VPS29-208ENST00000550267 PRYO14603 147 aa5.69□□□□□ -1.5
VPS29-208ENST00000550267 SPRR1AP35321 89 aa5.69□□□□□ -1.5
VPS29-208ENST00000550267 KIAA1644Q3SXP7 199 aa5.69□□□□□ -1.5
VPS29-208ENST00000550267 SSBP3-AS1Q7Z2R9 100 aa5.69□□□□□ -1.5
VPS29-208ENST00000550267 ETDCA0A1B0GVM5 59 aa5.68□□□□□ -1.5
VPS29-208ENST00000550267 KRTAP4-16G5E9R7 235 aaPredicted RBP5.68□□□□□ -1.5
VPS29-208ENST00000550267 ERC2-IT1O76042 136 aa5.67□□□□□ -1.5
VPS29-208ENST00000550267 IGLC3P0DOY3 106 aa5.67□□□□□ -1.5
VPS29-208ENST00000550267 ZNF22P17026 224 aaPredicted RBP5.67□□□□□ -1.5
VPS29-208ENST00000550267 A0A0U1RRA0 63 aa5.66□□□□□ -1.5
VPS29-208ENST00000550267 C9orf92A6NGG3 77 aa5.66□□□□□ -1.5
VPS29-208ENST00000550267 LINC01549A6NIU2 74 aa5.66□□□□□ -1.5
VPS29-208ENST00000550267 NCR3O14931 201 aa5.66□□□□□ -1.5
VPS29-208ENST00000550267 LINC00158P58513 81 aa5.66□□□□□ -1.5
VPS29-208ENST00000550267 KCNQ1DNQ9H478 68 aa5.66□□□□□ -1.5
VPS29-208ENST00000550267 FLGP20930 4061 aaPredicted RBP5.64□□□□□ -1.51
VPS29-208ENST00000550267 LINC01546A6NGU7 62 aa5.64□□□□□ -1.51
VPS29-208ENST00000550267 NDUFA6P56556 154 aa5.64□□□□□ -1.51
VPS29-208ENST00000550267 BOD1L2Q8IYS8 172 aa5.64□□□□□ -1.51
VPS29-208ENST00000550267 TRBV10-3A0A0K0K1G6 114 aa5.63□□□□□ -1.51
VPS29-208ENST00000550267 MT-ND4LP03901 98 aa5.63□□□□□ -1.51
VPS29-208ENST00000550267 C9orf153Q5TBE3 101 aa5.63□□□□□ -1.51
VPS29-208ENST00000550267 SFTA2Q6UW10 78 aa5.63□□□□□ -1.51
VPS29-208ENST00000550267 COX6B2Q6YFQ2 88 aa5.63□□□□□ -1.51
VPS29-208ENST00000550267 Q9BRP9 147 aa5.62□□□□□ -1.51
VPS29-208ENST00000550267 C11orf86A6NJI1 115 aa5.61□□□□□ -1.51
VPS29-208ENST00000550267 SMIM13P0DJ93 91 aa5.61□□□□□ -1.51
VPS29-208ENST00000550267 SSPOA2VEC9 5147 aa5.61□□□□□ -1.51
VPS29-208ENST00000550267 TRAV9-1A0A075B6T8 112 aa5.6□□□□□ -1.51
VPS29-208ENST00000550267 TMEM170BQ5T4T1 132 aa5.6□□□□□ -1.51
VPS29-208ENST00000550267 LCE1EQ5T753 118 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms