RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 ZNF815PA8K554 130 aa8.62□□□□□ -1.03
PRPF40B-207ENST00000548399 COX8AP10176 69 aa8.62□□□□□ -1.03
PRPF40B-207ENST00000548399 HNRNPA3P51991 378 aaKnown RBP8.62□□□□□ -1.03
PRPF40B-207ENST00000548399 FAM19A5Q7Z5A7 132 aaPredicted RBP8.62□□□□□ -1.03
PRPF40B-207ENST00000548399 ZNF625Q96I27 306 aaPredicted RBP8.62□□□□□ -1.03
PRPF40B-207ENST00000548399 TTTY13Q9BZ97 58 aa8.62□□□□□ -1.03
PRPF40B-207ENST00000548399 HERV-K104P63124 156 aa8.61□□□□□ -1.03
PRPF40B-207ENST00000548399 C9orf129Q5T035 196 aaKnown RBP8.61□□□□□ -1.03
PRPF40B-207ENST00000548399 BOD1L2Q8IYS8 172 aa8.61□□□□□ -1.03
PRPF40B-207ENST00000548399 C14orf144Q96I85 54 aa8.61□□□□□ -1.03
PRPF40B-207ENST00000548399 FLG2Q5D862 2391 aaPredicted RBP8.6□□□□□ -1.03
PRPF40B-207ENST00000548399 DLEU1O43261 78 aa8.6□□□□□ -1.03
PRPF40B-207ENST00000548399 PHF5AQ7RTV0 110 aaKnown RBP8.6□□□□□ -1.03
PRPF40B-207ENST00000548399 SLC25A34Q6PIV7 304 aa8.59□□□□□ -1.03
PRPF40B-207ENST00000548399 XAGE1AQ9HD64 81 aa8.59□□□□□ -1.03
PRPF40B-207ENST00000548399 A0A0J9YXY3 114 aa8.58□□□□□ -1.04
PRPF40B-207ENST00000548399 LINC00587B1AMM8 73 aa8.58□□□□□ -1.04
PRPF40B-207ENST00000548399 J3QL48 77 aa8.58□□□□□ -1.04
PRPF40B-207ENST00000548399 M0QXV9 152 aa8.58□□□□□ -1.04
PRPF40B-207ENST00000548399 MYCBP2O75592 4640 aa8.57□□□□□ -1.04
PRPF40B-207ENST00000548399 KRTAP29-1A8MX34 341 aaPredicted RBP8.57□□□□□ -1.04
PRPF40B-207ENST00000548399 SCGB1D4Q6XE38 83 aa8.57□□□□□ -1.04
PRPF40B-207ENST00000548399 KRTAP7-1Q8IUC3 87 aa8.57□□□□□ -1.04
PRPF40B-207ENST00000548399 UQCR10Q9UDW1 63 aa8.57□□□□□ -1.04
PRPF40B-207ENST00000548399 MEIG1Q5JSS6 88 aa8.56□□□□□ -1.04
PRPF40B-207ENST00000548399 PRO1933Q9H354 126 aa8.56□□□□□ -1.04
PRPF40B-207ENST00000548399 PSORS1C2Q9UIG4 136 aa8.56□□□□□ -1.04
PRPF40B-207ENST00000548399 DMBT1Q9UGM3 2413 aaPredicted RBP8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 TSTD3H0UI37 97 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 OXTP01178 125 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 PFN2P35080 140 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 UBE2BP63146 152 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 COX17Q14061 63 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 SERTAD4-AS1Q5TG53 156 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 TP73-AS1Q9UF72 201 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 ERG28Q9UKR5 140 aa8.55□□□□□ -1.04
PRPF40B-207ENST00000548399 TIMM17BO60830 172 aa8.54□□□□□ -1.04
PRPF40B-207ENST00000548399 LINC00158P58513 81 aa8.54□□□□□ -1.04
PRPF40B-207ENST00000548399 TMEM238C9JI98 176 aa8.53□□□□□ -1.04
PRPF40B-207ENST00000548399 SMIM13P0DJ93 91 aa8.53□□□□□ -1.04
PRPF40B-207ENST00000548399 C1orf137Q5JT78 98 aa8.53□□□□□ -1.04
PRPF40B-207ENST00000548399 MIEN1Q9BRT3 115 aa8.53□□□□□ -1.04
PRPF40B-207ENST00000548399 HIGD1BQ9P298 99 aa8.53□□□□□ -1.04
PRPF40B-207ENST00000548399 LBHQ53QV2 105 aaPredicted RBP8.52□□□□□ -1.05
PRPF40B-207ENST00000548399 SPINK6Q6UWN8 80 aa8.52□□□□□ -1.05
PRPF40B-207ENST00000548399 C22orf24Q9Y442 160 aa8.52□□□□□ -1.05
PRPF40B-207ENST00000548399 A0A0U1RRA0 63 aa8.51□□□□□ -1.05
PRPF40B-207ENST00000548399 C2orf91Q6ZV80 131 aa8.51□□□□□ -1.05
PRPF40B-207ENST00000548399 KRTAP11-1Q8IUC1 163 aa8.51□□□□□ -1.05
PRPF40B-207ENST00000548399 LITAFQ99732 161 aa8.51□□□□□ -1.05
PRPF40B-207ENST00000548399 PLA2G2DQ9UNK4 145 aa8.51□□□□□ -1.05
PRPF40B-207ENST00000548399 SRSF9Q13242 221 aaKnown RBP eCLIP8.5□□□□□ -1.05
PRPF40B-207ENST00000548399 ADAMTSL4-AS1Q5T5F5 129 aa8.5□□□□□ -1.05
PRPF40B-207ENST00000548399 MRPL55Q7Z7F7 128 aaKnown RBP8.5□□□□□ -1.05
PRPF40B-207ENST00000548399 SND1-IT1Q9HBX3 110 aa8.5□□□□□ -1.05
PRPF40B-207ENST00000548399 SPANXB1Q9NS25 103 aaPredicted RBP8.5□□□□□ -1.05
PRPF40B-207ENST00000548399 Q6ZVH6 145 aa8.49□□□□□ -1.05
PRPF40B-207ENST00000548399 MIR7-3HGQ8N6C7 128 aa8.49□□□□□ -1.05
PRPF40B-207ENST00000548399 NKAPP1Q8N9T2 125 aa8.49□□□□□ -1.05
PRPF40B-207ENST00000548399 SPANXDQ9BXN6 97 aa8.49□□□□□ -1.05
PRPF40B-207ENST00000548399 SPANXCQ9NY87 97 aa8.49□□□□□ -1.05
PRPF40B-207ENST00000548399 IGLV7-43P04211 117 aa8.48□□□□□ -1.05
PRPF40B-207ENST00000548399 REG3GQ6UW15 175 aa8.48□□□□□ -1.05
PRPF40B-207ENST00000548399 DAND5Q8N907 189 aa8.48□□□□□ -1.05
PRPF40B-207ENST00000548399 IGLV5-37A0A075B6J1 123 aa8.47□□□□□ -1.05
PRPF40B-207ENST00000548399 HIST1H4GQ99525 98 aa8.47□□□□□ -1.05
PRPF40B-207ENST00000548399 PKHD1L1Q86WI1 4243 aa8.46□□□□□ -1.05
PRPF40B-207ENST00000548399 IFITM1P13164 125 aa8.46□□□□□ -1.06
PRPF40B-207ENST00000548399 RPL24P83731 157 aaKnown RBP8.46□□□□□ -1.06
PRPF40B-207ENST00000548399 TAL2Q16559 108 aa8.46□□□□□ -1.06
PRPF40B-207ENST00000548399 COPS9Q8WXC6 57 aa8.46□□□□□ -1.06
PRPF40B-207ENST00000548399 GAGE10A6NGK3 116 aa8.45□□□□□ -1.06
PRPF40B-207ENST00000548399 LINC00308Q8TCZ7 52 aa8.45□□□□□ -1.06
PRPF40B-207ENST00000548399 LINC00167Q96N53 147 aa8.45□□□□□ -1.06
PRPF40B-207ENST00000548399 LOC107984156A0A0G2JMH3 177 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 RPL37AP8A6NKH3 93 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 DDTP30046 118 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 NPC2P61916 151 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 HSD52Q0P140 79 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 MUSTN1Q8IVN3 82 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 ARL17AQ8IVW1 177 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 DIRC1Q969H9 104 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 PPDPFQ9H3Y8 114 aa8.44□□□□□ -1.06
PRPF40B-207ENST00000548399 VPREB1P12018 145 aa8.43□□□□□ -1.06
PRPF40B-207ENST00000548399 LINC01600Q96MT4 127 aa8.43□□□□□ -1.06
PRPF40B-207ENST00000548399 LRP1Q07954 4544 aaKnown RBP8.43□□□□□ -1.06
PRPF40B-207ENST00000548399 CTAG1AP78358 180 aa8.42□□□□□ -1.06
PRPF40B-207ENST00000548399 SOSTDC1Q6X4U4 206 aa8.42□□□□□ -1.06
PRPF40B-207ENST00000548399 EIF4EBP3O60516 100 aaPredicted RBP8.41□□□□□ -1.06
PRPF40B-207ENST00000548399 MT1HL1P0DM35 61 aa8.41□□□□□ -1.06
PRPF40B-207ENST00000548399 CEND1Q8N111 149 aa8.41□□□□□ -1.06
PRPF40B-207ENST00000548399 HERC1Q15751 4861 aa8.41□□□□□ -1.06
PRPF40B-207ENST00000548399 IGKV2-28A0A075B6P5 120 aa8.4□□□□□ -1.06
PRPF40B-207ENST00000548399 H0Y9J4 135 aa8.4□□□□□ -1.06
PRPF40B-207ENST00000548399 BCE1O60756 84 aa8.4□□□□□ -1.06
PRPF40B-207ENST00000548399 IGKV2D-28P01615 120 aa8.4□□□□□ -1.06
PRPF40B-207ENST00000548399 Q8NDZ9 215 aa8.4□□□□□ -1.06
PRPF40B-207ENST00000548399 FAT3Q8TDW7 4589 aa8.39□□□□□ -1.07
PRPF40B-207ENST00000548399 PCP4L1A6NKN8 68 aa8.39□□□□□ -1.07
PRPF40B-207ENST00000548399 ZNF861PO60384 105 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms