RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 LBHQ53QV2 105 aaPredicted RBP4.24□□□□□ -1.73
VPS52-219ENST00000493379 UNQ6190/PRO20217Q6UXQ8 127 aa4.24□□□□□ -1.73
VPS52-219ENST00000493379 C6orf48Q9UBA6 75 aa4.24□□□□□ -1.73
VPS52-219ENST00000493379 A0A087WYN8 130 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 A0A096LNI7 61 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 LOC107984640A0A0U1RRK4 108 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 C11orf86A6NJI1 115 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 F8VRH5 84 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 RPL24P83731 157 aaKnown RBP4.23□□□□□ -1.73
VPS52-219ENST00000493379 C6orf226Q5I0X4 101 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 LINC00469Q8N7U9 141 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 HSPB8Q9UJY1 196 aa4.23□□□□□ -1.73
VPS52-219ENST00000493379 CHTOPQ9Y3Y2 248 aaKnown RBP4.23□□□□□ -1.73
VPS52-219ENST00000493379 TMEM223A0PJW6 202 aa4.22□□□□□ -1.73
VPS52-219ENST00000493379 H3BRM9 83 aa4.22□□□□□ -1.73
VPS52-219ENST00000493379 C2orf82Q6UX34 121 aa4.22□□□□□ -1.73
VPS52-219ENST00000493379 Q6ZRP5 223 aa4.22□□□□□ -1.73
VPS52-219ENST00000493379 NDUFC2-KCTD14E9PQ53 114 aa4.21□□□□□ -1.74
VPS52-219ENST00000493379 CHTF8P0CG12 524 aa4.21□□□□□ -1.74
VPS52-219ENST00000493379 SFTA2Q6UW10 78 aa4.21□□□□□ -1.74
VPS52-219ENST00000493379 COX7B2Q8TF08 81 aa4.21□□□□□ -1.74
VPS52-219ENST00000493379 ZNF625Q96I27 306 aaPredicted RBP4.21□□□□□ -1.74
VPS52-219ENST00000493379 A0A1W2PNN7 141 aa4.2□□□□□ -1.74
VPS52-219ENST00000493379 IGKV2-30P06310 120 aa4.2□□□□□ -1.74
VPS52-219ENST00000493379 PLNP26678 52 aa4.2□□□□□ -1.74
VPS52-219ENST00000493379 NDUFA6P56556 154 aa4.2□□□□□ -1.74
VPS52-219ENST00000493379 CKS1BP61024 79 aa4.2□□□□□ -1.74
VPS52-219ENST00000493379 COX17Q14061 63 aa4.2□□□□□ -1.74
VPS52-219ENST00000493379 KRTAP7-1Q8IUC3 87 aa4.2□□□□□ -1.74
VPS52-219ENST00000493379 SYS1-DBNDD2H3BUS1 97 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 SPINK8P0C7L1 97 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 FABP4P15090 132 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 MAJINQ3KP22 176 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 C9orf116Q5BN46 136 aaPredicted RBP4.19□□□□□ -1.74
VPS52-219ENST00000493379 TMEM170BQ5T4T1 132 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 LINC01545Q5VT33 79 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 STPG4Q8N801 248 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 MAP1LC3CQ9BXW4 147 aa4.19□□□□□ -1.74
VPS52-219ENST00000493379 LPAP08519 4548 aa4.18□□□□□ -1.74
VPS52-219ENST00000493379 IGKV2-24A0A0C4DH68 120 aa4.18□□□□□ -1.74
VPS52-219ENST00000493379 C9orf129Q5T035 196 aaKnown RBP4.18□□□□□ -1.74
VPS52-219ENST00000493379 TOMM7Q9P0U1 55 aa4.18□□□□□ -1.74
VPS52-219ENST00000493379 LOC107984156A0A0G2JMH3 177 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 DPM2O94777 84 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 OXTP01178 125 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 IGKCP01834 107 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 C3orf79P0CE67 100 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 ARL17AQ8IVW1 177 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 DPH3Q96FX2 82 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 TP73-AS1Q9UF72 201 aa4.17□□□□□ -1.74
VPS52-219ENST00000493379 LINC00587B1AMM8 73 aa4.16□□□□□ -1.74
VPS52-219ENST00000493379 E9PLD3 99 aa4.16□□□□□ -1.74
VPS52-219ENST00000493379 LEPROTO15243 131 aa4.16□□□□□ -1.74
VPS52-219ENST00000493379 HERV-K104P63124 156 aa4.16□□□□□ -1.74
VPS52-219ENST00000493379 RPL18AQ02543 176 aaKnown RBP4.16□□□□□ -1.74
VPS52-219ENST00000493379 SRSF9Q13242 221 aaKnown RBP eCLIP4.16□□□□□ -1.74
VPS52-219ENST00000493379 HIST3H2BBQ8N257 126 aa4.16□□□□□ -1.74
VPS52-219ENST00000493379 PLEKHB2Q96CS7 222 aa4.16□□□□□ -1.74
VPS52-219ENST00000493379 NMUP48645 174 aa4.15□□□□□ -1.75
VPS52-219ENST00000493379 AKR1D1P51857 326 aa4.15□□□□□ -1.75
VPS52-219ENST00000493379 RPL37AP61513 92 aaKnown RBP4.15□□□□□ -1.75
VPS52-219ENST00000493379 C7orf33Q8WU49 177 aa4.15□□□□□ -1.75
VPS52-219ENST00000493379 HIST1H2BLQ99880 126 aa4.15□□□□□ -1.75
VPS52-219ENST00000493379 ERG28Q9UKR5 140 aa4.15□□□□□ -1.75
VPS52-219ENST00000493379 MYMXA0A1B0GTQ4 84 aa4.14□□□□□ -1.75
VPS52-219ENST00000493379 FAM168BA1KXE4 195 aa4.14□□□□□ -1.75
VPS52-219ENST00000493379 J3QQQ9 107 aa4.14□□□□□ -1.75
VPS52-219ENST00000493379 TSPEAR-AS2P59090 65 aa4.14□□□□□ -1.75
VPS52-219ENST00000493379 KRTAP4-9Q9BYQ8 210 aa4.14□□□□□ -1.75
VPS52-219ENST00000493379 NDUFA12Q9UI09 145 aa4.14□□□□□ -1.75
VPS52-219ENST00000493379 H0Y8G0 127 aa4.13□□□□□ -1.75
VPS52-219ENST00000493379 HERVK_113P61574 105 aa4.13□□□□□ -1.75
VPS52-219ENST00000493379 PRR3P79522 188 aaKnown RBP4.13□□□□□ -1.75
VPS52-219ENST00000493379 PHF5AQ7RTV0 110 aaKnown RBP4.13□□□□□ -1.75
VPS52-219ENST00000493379 KRTAP11-1Q8IUC1 163 aa4.13□□□□□ -1.75
VPS52-219ENST00000493379 PMCHL2Q9BQD1 86 aa4.13□□□□□ -1.75
VPS52-219ENST00000493379 SND1-IT1Q9HBX3 110 aa4.13□□□□□ -1.75
VPS52-219ENST00000493379 XAGE1AQ9HD64 81 aa4.13□□□□□ -1.75
VPS52-219ENST00000493379 C22orf24Q9Y442 160 aa4.13□□□□□ -1.75
VPS52-219ENST00000493379 MT1HL1P0DM35 61 aa4.12□□□□□ -1.75
VPS52-219ENST00000493379 HNRNPA3P51991 378 aaKnown RBP4.12□□□□□ -1.75
VPS52-219ENST00000493379 KRTAP4-7Q9BYR0 210 aa4.12□□□□□ -1.75
VPS52-219ENST00000493379 IGLV9-49A0A0B4J1Y8 123 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 M0QXV9 152 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 TIMM17BO60830 172 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 S100A6P06703 90 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 PFN2P35080 140 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 KRTDAPP60985 99 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 SPINK6Q6UWN8 80 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 MRPL55Q7Z7F7 128 aaKnown RBP4.11□□□□□ -1.75
VPS52-219ENST00000493379 Q8NDZ9 215 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 LINC00167Q96N53 147 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 PPDPFQ9H3Y8 114 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 PSORS1C2Q9UIG4 136 aa4.11□□□□□ -1.75
VPS52-219ENST00000493379 IGKV2D-26A0A0A0MRZ7 120 aa4.1□□□□□ -1.75
VPS52-219ENST00000493379 A0A0J9YXY3 114 aa4.1□□□□□ -1.75
VPS52-219ENST00000493379 C20orf202A1L168 122 aa4.1□□□□□ -1.75
VPS52-219ENST00000493379 SMIM13P0DJ93 91 aa4.1□□□□□ -1.75
VPS52-219ENST00000493379 LGALS3P17931 250 aaKnown RBP4.1□□□□□ -1.75
VPS52-219ENST00000493379 LINC00158P58513 81 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms