RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 HIST1H2BBP33778 126 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 PTTG1IPP53801 180 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 HIST1H2BDP58876 126 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 HIST1H2BCP62807 126 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 RPL18AQ02543 176 aaKnown RBP9.34□□□□□ -0.91
LIMS3-205ENST00000487150 HIST2H2BEQ16778 126 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.34□□□□□ -0.91
LIMS3-205ENST00000487150 LINC00528Q8N1L1 170 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 FAM19A2Q8N3H0 131 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 HIST1H2BHQ93079 126 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 HIST1H2BNQ99877 126 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 HIST1H2BMQ99879 126 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 PLAC8Q9NZF1 115 aa9.34□□□□□ -0.91
LIMS3-205ENST00000487150 A0A087WYN8 130 aa9.33□□□□□ -0.92
LIMS3-205ENST00000487150 F8VRH5 84 aa9.33□□□□□ -0.92
LIMS3-205ENST00000487150 CHTF8P0CG12 524 aa9.33□□□□□ -0.92
LIMS3-205ENST00000487150 COX7B2Q8TF08 81 aa9.33□□□□□ -0.92
LIMS3-205ENST00000487150 SMR3BP02814 79 aaPredicted RBP9.32□□□□□ -0.92
LIMS3-205ENST00000487150 ZNF22P17026 224 aaPredicted RBP9.32□□□□□ -0.92
LIMS3-205ENST00000487150 GAGE2BQ13066 116 aa9.32□□□□□ -0.92
LIMS3-205ENST00000487150 TMEM170BQ5T4T1 132 aa9.32□□□□□ -0.92
LIMS3-205ENST00000487150 UNQ6190/PRO20217Q6UXQ8 127 aa9.32□□□□□ -0.92
LIMS3-205ENST00000487150 C7orf33Q8WU49 177 aa9.32□□□□□ -0.92
LIMS3-205ENST00000487150 C6orf48Q9UBA6 75 aa9.32□□□□□ -0.92
LIMS3-205ENST00000487150 NDUFC2-KCTD14E9PQ53 114 aa9.31□□□□□ -0.92
LIMS3-205ENST00000487150 SPINK8P0C7L1 97 aa9.31□□□□□ -0.92
LIMS3-205ENST00000487150 LINC00310P59036 64 aa9.31□□□□□ -0.92
LIMS3-205ENST00000487150 STPG4Q8N801 248 aa9.31□□□□□ -0.92
LIMS3-205ENST00000487150 C11orf86A6NJI1 115 aa9.3□□□□□ -0.92
LIMS3-205ENST00000487150 PANO1I0J062 215 aa9.3□□□□□ -0.92
LIMS3-205ENST00000487150 PLNP26678 52 aa9.3□□□□□ -0.92
LIMS3-205ENST00000487150 C10orf25Q5T742 122 aa9.3□□□□□ -0.92
LIMS3-205ENST00000487150 C2orf82Q6UX34 121 aa9.3□□□□□ -0.92
LIMS3-205ENST00000487150 MAP1LC3CQ9BXW4 147 aa9.3□□□□□ -0.92
LIMS3-205ENST00000487150 IGLV5-39A0A0G2JS06 123 aa9.29□□□□□ -0.92
LIMS3-205ENST00000487150 COA6Q5JTJ3 125 aaKnown RBP9.28□□□□□ -0.92
LIMS3-205ENST00000487150 DNAH8Q96JB1 4490 aa9.28□□□□□ -0.92
LIMS3-205ENST00000487150 H0Y8G0 127 aa9.27□□□□□ -0.93
LIMS3-205ENST00000487150 FABP4P15090 132 aa9.27□□□□□ -0.93
LIMS3-205ENST00000487150 RPL37AP61513 92 aaKnown RBP9.27□□□□□ -0.93
LIMS3-205ENST00000487150 ODF1Q14990 250 aa9.27□□□□□ -0.93
LIMS3-205ENST00000487150 Q6ZRP5 223 aa9.26□□□□□ -0.93
LIMS3-205ENST00000487150 NUPR1O60356 82 aa9.25□□□□□ -0.93
LIMS3-205ENST00000487150 DPM2O94777 84 aa9.25□□□□□ -0.93
LIMS3-205ENST00000487150 HERVK_113P61574 105 aa9.25□□□□□ -0.93
LIMS3-205ENST00000487150 TMEM223A0PJW6 202 aa9.24□□□□□ -0.93
LIMS3-205ENST00000487150 GAGE2EQ4V326 116 aa9.24□□□□□ -0.93
LIMS3-205ENST00000487150 C9orf116Q5BN46 136 aaPredicted RBP9.24□□□□□ -0.93
LIMS3-205ENST00000487150 GAGE2DQ9UEU5 116 aa9.24□□□□□ -0.93
LIMS3-205ENST00000487150 IGKCP01834 107 aa9.22□□□□□ -0.93
LIMS3-205ENST00000487150 INAFM2P0DMQ5 153 aa9.22□□□□□ -0.93
LIMS3-205ENST00000487150 COX17Q14061 63 aa9.22□□□□□ -0.93
LIMS3-205ENST00000487150 KRTAP4-5Q9BYR2 181 aa9.22□□□□□ -0.93
LIMS3-205ENST00000487150 AKR1D1P51857 326 aa9.21□□□□□ -0.94
LIMS3-205ENST00000487150 FAT1Q14517 4588 aa9.21□□□□□ -0.94
LIMS3-205ENST00000487150 LINC00587B1AMM8 73 aa9.2□□□□□ -0.94
LIMS3-205ENST00000487150 SYS1-DBNDD2H3BUS1 97 aa9.2□□□□□ -0.94
LIMS3-205ENST00000487150 HERV-K104P63124 156 aa9.2□□□□□ -0.94
LIMS3-205ENST00000487150 PET117Q6UWS5 81 aa9.2□□□□□ -0.94
LIMS3-205ENST00000487150 PLEKHB2Q96CS7 222 aa9.2□□□□□ -0.94
LIMS3-205ENST00000487150 KRTAP17-1Q9BYP8 105 aa9.2□□□□□ -0.94
LIMS3-205ENST00000487150 C20orf202A1L168 122 aa9.19□□□□□ -0.94
LIMS3-205ENST00000487150 ERG28Q9UKR5 140 aa9.19□□□□□ -0.94
LIMS3-205ENST00000487150 A0A1W2PNN7 141 aa9.18□□□□□ -0.94
LIMS3-205ENST00000487150 M0QXV9 152 aa9.18□□□□□ -0.94
LIMS3-205ENST00000487150 FAM19A5Q7Z5A7 132 aaPredicted RBP9.18□□□□□ -0.94
LIMS3-205ENST00000487150 ZNF625Q96I27 306 aaPredicted RBP9.18□□□□□ -0.94
LIMS3-205ENST00000487150 MYMXA0A1B0GTQ4 84 aa9.17□□□□□ -0.94
LIMS3-205ENST00000487150 S100A6P06703 90 aa9.17□□□□□ -0.94
LIMS3-205ENST00000487150 NMUP48645 174 aa9.17□□□□□ -0.94
LIMS3-205ENST00000487150 LEPROTO15243 131 aa9.16□□□□□ -0.94
LIMS3-205ENST00000487150 S100A2P29034 98 aa9.16□□□□□ -0.94
LIMS3-205ENST00000487150 PRR3P79522 188 aaKnown RBP9.16□□□□□ -0.94
LIMS3-205ENST00000487150 LBHQ53QV2 105 aaPredicted RBP9.16□□□□□ -0.94
LIMS3-205ENST00000487150 C9orf129Q5T035 196 aaKnown RBP9.16□□□□□ -0.94
LIMS3-205ENST00000487150 LINC01545Q5VT33 79 aa9.16□□□□□ -0.94
LIMS3-205ENST00000487150 XAGE1AQ9HD64 81 aa9.16□□□□□ -0.94
LIMS3-205ENST00000487150 TP73-AS1Q9UF72 201 aa9.16□□□□□ -0.94
LIMS3-205ENST00000487150 NDUFA12Q9UI09 145 aa9.16□□□□□ -0.94
LIMS3-205ENST00000487150 PFN2P35080 140 aa9.15□□□□□ -0.94
LIMS3-205ENST00000487150 KRTDAPP60985 99 aa9.15□□□□□ -0.94
LIMS3-205ENST00000487150 PMCHL2Q9BQD1 86 aa9.15□□□□□ -0.94
LIMS3-205ENST00000487150 PCLOQ9Y6V0 5065 aa9.15□□□□□ -0.94
LIMS3-205ENST00000487150 LGALS3P17931 250 aaKnown RBP9.14□□□□□ -0.95
LIMS3-205ENST00000487150 KRTAP10-4P60372 401 aaPredicted RBP9.14□□□□□ -0.95
LIMS3-205ENST00000487150 UBE2BP63146 152 aa9.14□□□□□ -0.95
LIMS3-205ENST00000487150 PLA2G2DQ9UNK4 145 aa9.14□□□□□ -0.95
LIMS3-205ENST00000487150 FAM168BA1KXE4 195 aa9.13□□□□□ -0.95
LIMS3-205ENST00000487150 J3QQQ9 107 aa9.13□□□□□ -0.95
LIMS3-205ENST00000487150 C3orf79P0CE67 100 aa9.13□□□□□ -0.95
LIMS3-205ENST00000487150 MEIG1Q5JSS6 88 aa9.13□□□□□ -0.95
LIMS3-205ENST00000487150 ABCA13Q86UQ4 5058 aa9.12□□□□□ -0.95
LIMS3-205ENST00000487150 E9PLD3 99 aa9.12□□□□□ -0.95
LIMS3-205ENST00000487150 LINC00158P58513 81 aa9.12□□□□□ -0.95
LIMS3-205ENST00000487150 RPL24P83731 157 aaKnown RBP9.12□□□□□ -0.95
LIMS3-205ENST00000487150 PHF5AQ7RTV0 110 aaKnown RBP9.12□□□□□ -0.95
LIMS3-205ENST00000487150 NKAPP1Q8N9T2 125 aa9.12□□□□□ -0.95
LIMS3-205ENST00000487150 VPS13BQ7Z7G8 4022 aa9.12□□□□□ -0.95
LIMS3-205ENST00000487150 SND1-IT1Q9HBX3 110 aa9.11□□□□□ -0.95
LIMS3-205ENST00000487150 IGLV5-37A0A075B6J1 123 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms