RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 CKS1BP61024 79 aa12.61□□□□□ -0.39
LIME1-205ENST00000480139 TMEM170BQ5T4T1 132 aa12.61□□□□□ -0.39
LIME1-205ENST00000480139 C10orf25Q5T742 122 aa12.61□□□□□ -0.39
LIME1-205ENST00000480139 SCXQ7RTU7 201 aa12.61□□□□□ -0.39
LIME1-205ENST00000480139 COX7B2Q8TF08 81 aa12.61□□□□□ -0.39
LIME1-205ENST00000480139 HERC2O95714 4834 aa12.61□□□□□ -0.39
LIME1-205ENST00000480139 HSPG2P98160 4391 aa12.6□□□□□ -0.39
LIME1-205ENST00000480139 H0Y8G0 127 aa12.6□□□□□ -0.39
LIME1-205ENST00000480139 PANO1I0J062 215 aa12.6□□□□□ -0.39
LIME1-205ENST00000480139 C2orf82Q6UX34 121 aa12.6□□□□□ -0.39
LIME1-205ENST00000480139 SPACA4Q8TDM5 124 aa12.6□□□□□ -0.39
LIME1-205ENST00000480139 LINC00474Q9P2X8 69 aa12.6□□□□□ -0.39
LIME1-205ENST00000480139 C6orf48Q9UBA6 75 aa12.6□□□□□ -0.39
LIME1-205ENST00000480139 TLX1NBP0CAT3 122 aa12.59□□□□□ -0.39
LIME1-205ENST00000480139 A0A096LNI7 61 aa12.58□□□□□ -0.4
LIME1-205ENST00000480139 PLNP26678 52 aa12.58□□□□□ -0.4
LIME1-205ENST00000480139 HAMPP81172 84 aa12.58□□□□□ -0.4
LIME1-205ENST00000480139 CIRBP-AS1Q8TBR5 109 aa12.58□□□□□ -0.4
LIME1-205ENST00000480139 TMEM223A0PJW6 202 aa12.57□□□□□ -0.4
LIME1-205ENST00000480139 CHTF8P0CG12 524 aa12.57□□□□□ -0.4
LIME1-205ENST00000480139 SYS1-DBNDD2H3BUS1 97 aa12.56□□□□□ -0.4
LIME1-205ENST00000480139 PTTG1IPP53801 180 aa12.56□□□□□ -0.4
LIME1-205ENST00000480139 IGKV2-24A0A0C4DH68 120 aa12.55□□□□□ -0.4
LIME1-205ENST00000480139 DPM2O94777 84 aa12.55□□□□□ -0.4
LIME1-205ENST00000480139 Q8N1X5 172 aa12.54□□□□□ -0.4
LIME1-205ENST00000480139 IGKCP01834 107 aa12.53□□□□□ -0.4
LIME1-205ENST00000480139 RPL18AQ02543 176 aaKnown RBP12.53□□□□□ -0.4
LIME1-205ENST00000480139 MAJINQ3KP22 176 aa12.53□□□□□ -0.4
LIME1-205ENST00000480139 SFTA2Q6UW10 78 aa12.53□□□□□ -0.4
LIME1-205ENST00000480139 PET117Q6UWS5 81 aa12.53□□□□□ -0.4
LIME1-205ENST00000480139 PLAC8Q9NZF1 115 aa12.53□□□□□ -0.4
LIME1-205ENST00000480139 A0A087WYN8 130 aa12.52□□□□□ -0.41
LIME1-205ENST00000480139 NDUFC2-KCTD14E9PQ53 114 aa12.52□□□□□ -0.41
LIME1-205ENST00000480139 GAGE2BQ13066 116 aa12.52□□□□□ -0.41
LIME1-205ENST00000480139 S100A6P06703 90 aa12.51□□□□□ -0.41
LIME1-205ENST00000480139 C3orf79P0CE67 100 aa12.51□□□□□ -0.41
LIME1-205ENST00000480139 LINC01545Q5VT33 79 aa12.51□□□□□ -0.41
LIME1-205ENST00000480139 Q6ZRP5 223 aa12.51□□□□□ -0.41
LIME1-205ENST00000480139 DPH3Q96FX2 82 aa12.51□□□□□ -0.41
LIME1-205ENST00000480139 PMCHL2Q9BQD1 86 aa12.51□□□□□ -0.41
LIME1-205ENST00000480139 C9orf116Q5BN46 136 aaPredicted RBP12.5□□□□□ -0.41
LIME1-205ENST00000480139 HIST3H2BBQ8N257 126 aa12.5□□□□□ -0.41
LIME1-205ENST00000480139 SMR3BP02814 79 aaPredicted RBP12.49□□□□□ -0.41
LIME1-205ENST00000480139 STPG4Q8N801 248 aa12.49□□□□□ -0.41
LIME1-205ENST00000480139 KRTAP17-1Q9BYP8 105 aa12.49□□□□□ -0.41
LIME1-205ENST00000480139 EPM2AB3EWF7 344 aa12.48□□□□□ -0.41
LIME1-205ENST00000480139 KRTDAPP60985 99 aa12.47□□□□□ -0.41
LIME1-205ENST00000480139 ZNF625Q96I27 306 aaPredicted RBP12.47□□□□□ -0.41
LIME1-205ENST00000480139 S100A2P29034 98 aa12.46□□□□□ -0.41
LIME1-205ENST00000480139 HERVK_113P61574 105 aa12.46□□□□□ -0.41
LIME1-205ENST00000480139 LINC00528Q8N1L1 170 aa12.46□□□□□ -0.41
LIME1-205ENST00000480139 HIST1H2BLQ99880 126 aa12.46□□□□□ -0.41
LIME1-205ENST00000480139 FAM229AH3BQW9 127 aa12.45□□□□□ -0.42
LIME1-205ENST00000480139 GAGE2EQ4V326 116 aa12.45□□□□□ -0.42
LIME1-205ENST00000480139 GAGE2DQ9UEU5 116 aa12.45□□□□□ -0.42
LIME1-205ENST00000480139 LEPROTO15243 131 aa12.44□□□□□ -0.42
LIME1-205ENST00000480139 PLEKHB2Q96CS7 222 aa12.44□□□□□ -0.42
LIME1-205ENST00000480139 C20orf202A1L168 122 aa12.43□□□□□ -0.42
LIME1-205ENST00000480139 SNRPEP62304 92 aaKnown RBP12.43□□□□□ -0.42
LIME1-205ENST00000480139 COX17Q14061 63 aa12.43□□□□□ -0.42
LIME1-205ENST00000480139 Q5VSD8 79 aa12.43□□□□□ -0.42
LIME1-205ENST00000480139 FAT1Q14517 4588 aa12.43□□□□□ -0.42
LIME1-205ENST00000480139 A0A1W2PNN7 141 aa12.42□□□□□ -0.42
LIME1-205ENST00000480139 C5orf52A6NGY3 159 aa12.42□□□□□ -0.42
LIME1-205ENST00000480139 AKR1D1P51857 326 aa12.42□□□□□ -0.42
LIME1-205ENST00000480139 ERG28Q9UKR5 140 aa12.42□□□□□ -0.42
LIME1-205ENST00000480139 C9orf129Q5T035 196 aaKnown RBP12.41□□□□□ -0.42
LIME1-205ENST00000480139 E9PLD3 99 aa12.4□□□□□ -0.42
LIME1-205ENST00000480139 J3QQQ9 107 aa12.4□□□□□ -0.42
LIME1-205ENST00000480139 HERV-K104P63124 156 aa12.4□□□□□ -0.42
LIME1-205ENST00000480139 NDUFA12Q9UI09 145 aa12.4□□□□□ -0.42
LIME1-205ENST00000480139 MYMXA0A1B0GTQ4 84 aa12.39□□□□□ -0.43
LIME1-205ENST00000480139 PLA2G1BP04054 148 aaKnown RBP12.39□□□□□ -0.43
LIME1-205ENST00000480139 TSPEAR-AS2P59090 65 aa12.39□□□□□ -0.43
LIME1-205ENST00000480139 NMUP48645 174 aa12.38□□□□□ -0.43
LIME1-205ENST00000480139 C7orf33Q8WU49 177 aa12.38□□□□□ -0.43
LIME1-205ENST00000480139 PFN2P35080 140 aa12.37□□□□□ -0.43
LIME1-205ENST00000480139 KRTAP4-5Q9BYR2 181 aa12.37□□□□□ -0.43
LIME1-205ENST00000480139 XAGE1AQ9HD64 81 aa12.37□□□□□ -0.43
LIME1-205ENST00000480139 FAM168BA1KXE4 195 aa12.36□□□□□ -0.43
LIME1-205ENST00000480139 LINC00587B1AMM8 73 aa12.36□□□□□ -0.43
LIME1-205ENST00000480139 LGALS3P17931 250 aaKnown RBP12.36□□□□□ -0.43
LIME1-205ENST00000480139 KRTAP7-1Q8IUC3 87 aa12.35□□□□□ -0.43
LIME1-205ENST00000480139 KRTAP10-4P60372 401 aaPredicted RBP12.34□□□□□ -0.43
LIME1-205ENST00000480139 RPL37AP61513 92 aaKnown RBP12.34□□□□□ -0.43
LIME1-205ENST00000480139 FAM19A5Q7Z5A7 132 aaPredicted RBP12.34□□□□□ -0.43
LIME1-205ENST00000480139 PLA2G2DQ9UNK4 145 aa12.34□□□□□ -0.43
LIME1-205ENST00000480139 MEIG1Q5JSS6 88 aa12.32□□□□□ -0.44
LIME1-205ENST00000480139 SND1-IT1Q9HBX3 110 aa12.32□□□□□ -0.44
LIME1-205ENST00000480139 SRRM2Q9UQ35 2752 aaKnown RBP12.31□□□□□ -0.44
LIME1-205ENST00000480139 M0QXV9 152 aa12.31□□□□□ -0.44
LIME1-205ENST00000480139 LINC00158P58513 81 aa12.31□□□□□ -0.44
LIME1-205ENST00000480139 SERTAD4-AS1Q5TG53 156 aa12.31□□□□□ -0.44
LIME1-205ENST00000480139 VPS13BQ7Z7G8 4022 aa12.31□□□□□ -0.44
LIME1-205ENST00000480139 SMIM13P0DJ93 91 aa12.3□□□□□ -0.44
LIME1-205ENST00000480139 PHF5AQ7RTV0 110 aaKnown RBP12.3□□□□□ -0.44
LIME1-205ENST00000480139 ABCA13Q86UQ4 5058 aa12.29□□□□□ -0.44
LIME1-205ENST00000480139 ATOH7Q8N100 152 aa12.29□□□□□ -0.44
LIME1-205ENST00000480139 TP73-AS1Q9UF72 201 aa12.29□□□□□ -0.44
LIME1-205ENST00000480139 IGLV5-37A0A075B6J1 123 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms