RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SSUH2Q9Y2M2 353 aa1.53□□□□□ -2.16
RNU4-54P-201ENST00000516428 GALR2O43603 387 aaPredicted RBP1.52□□□□□ -2.17
RNU4-54P-201ENST00000516428 METRNQ9UJH8 293 aa1.52□□□□□ -2.17
RNU4-54P-201ENST00000516428 ATF5Q9Y2D1 282 aaPredicted RBP1.52□□□□□ -2.17
RNU4-54P-201ENST00000516428 C7P10643 843 aa1.51□□□□□ -2.17
RNU4-54P-201ENST00000516428 PLCD3Q8N3E9 789 aa1.51□□□□□ -2.17
RNU4-54P-201ENST00000516428 EHMT2Q96KQ7 1210 aa1.51□□□□□ -2.17
RNU4-54P-201ENST00000516428 TAOK2Q9UL54 1235 aa1.51□□□□□ -2.17
RNU4-54P-201ENST00000516428 G3V3G9 751 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 GOLGA2Q08379 1002 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 DCAF8Q5TAQ9 597 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 ASTLQ6HA08 431 aaPredicted RBP1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 CHADLQ6NUI6 762 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 MIER1Q8N108 512 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 KRTAP3-3Q9BYR6 98 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 KRTAP3-2Q9BYR7 98 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 ZRANB1Q9UGI0 708 aa1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 FARP1Q9Y4F1 1045 aaPredicted RBP1.5□□□□□ -2.17
RNU4-54P-201ENST00000516428 SLC39A7Q92504 469 aa1.49□□□□□ -2.17
RNU4-54P-201ENST00000516428 FAM212AQ96EL1 285 aa1.49□□□□□ -2.17
RNU4-54P-201ENST00000516428 TMEM121BQ9BXQ6 578 aaPredicted RBP1.49□□□□□ -2.17
RNU4-54P-201ENST00000516428 SNPHO15079 494 aa1.48□□□□□ -2.17
RNU4-54P-201ENST00000516428 SEC24BO95487 1268 aa1.48□□□□□ -2.17
RNU4-54P-201ENST00000516428 CSRNP3Q8WYN3 585 aa1.48□□□□□ -2.17
RNU4-54P-201ENST00000516428 SGIP1Q9BQI5 828 aa1.48□□□□□ -2.17
RNU4-54P-201ENST00000516428 POTEFA5A3E0 1075 aa1.47□□□□□ -2.17
RNU4-54P-201ENST00000516428 ZBTB22O15209 634 aa1.47□□□□□ -2.17
RNU4-54P-201ENST00000516428 GSE1Q14687 1217 aa1.47□□□□□ -2.17
RNU4-54P-201ENST00000516428 KLHL34Q8N239 644 aa1.47□□□□□ -2.17
RNU4-54P-201ENST00000516428 TRIM41Q8WV44 630 aa1.47□□□□□ -2.17
RNU4-54P-201ENST00000516428 ATMINO43313 823 aaPredicted RBP1.46□□□□□ -2.18
RNU4-54P-201ENST00000516428 MKRN4PQ13434 485 aaPredicted RBP1.46□□□□□ -2.18
RNU4-54P-201ENST00000516428 RNF166Q96A37 237 aaPredicted RBP1.46□□□□□ -2.18
RNU4-54P-201ENST00000516428 IER5LQ5T953 404 aa1.45□□□□□ -2.18
RNU4-54P-201ENST00000516428 ZNF467Q7Z7K2 595 aaPredicted RBP1.45□□□□□ -2.18
RNU4-54P-201ENST00000516428 POTEB3A0JP26 581 aa1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 RIMBP2O15034 1052 aa1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 PLCG2P16885 1265 aa1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 TIE1P35590 1138 aa1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 MKRN3Q13064 507 aaKnown RBP1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 POTEBQ6S5H4 581 aa1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 L3MBTL3Q96JM7 780 aaPredicted RBP1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 TSPYL2Q9H2G4 693 aaPredicted RBP1.44□□□□□ -2.18
RNU4-54P-201ENST00000516428 C3orf67Q6ZVT6 689 aa1.43□□□□□ -2.18
RNU4-54P-201ENST00000516428 MARVELD3Q96A59 401 aa1.43□□□□□ -2.18
RNU4-54P-201ENST00000516428 CREBZFQ9NS37 354 aa1.43□□□□□ -2.18
RNU4-54P-201ENST00000516428 PCDHB13Q9Y5F0 798 aa1.43□□□□□ -2.18
RNU4-54P-201ENST00000516428 FKBP8Q14318 412 aa1.42□□□□□ -2.18
RNU4-54P-201ENST00000516428 KCNH8Q96L42 1107 aa1.42□□□□□ -2.18
RNU4-54P-201ENST00000516428 RYDENQ9NUL5 291 aaKnown RBP1.42□□□□□ -2.18
RNU4-54P-201ENST00000516428 EIF2AK3Q9NZJ5 1116 aaKnown RBP1.42□□□□□ -2.18
RNU4-54P-201ENST00000516428 SLAIN1Q8ND83 568 aa1.41□□□□□ -2.18
RNU4-54P-201ENST00000516428 SPOCK2Q92563 424 aa1.41□□□□□ -2.18
RNU4-54P-201ENST00000516428 HS3ST6Q96QI5 342 aa1.41□□□□□ -2.18
RNU4-54P-201ENST00000516428 ZNF316A6NFI3 1004 aaPredicted RBP1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 ATN1P54259 1190 aaPredicted RBP1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 ZNF710Q8N1W2 664 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 PROM2Q8N271 834 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 KIF12Q96FN5 646 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 STAC3Q96MF2 364 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 PHF12Q96QT6 1004 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 TMEM106CQ9BVX2 250 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 OCEL1Q9H607 264 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 MYT1LQ9UL68 1186 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 CIZ1Q9ULV3 898 aaPredicted RBP1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 CCDC61Q9Y6R9 512 aa1.4□□□□□ -2.19
RNU4-54P-201ENST00000516428 CHRM1P11229 460 aaPredicted RBP1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 PTGER2P43116 358 aa1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 VASPP50552 380 aaPredicted RBP1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 PDAP1Q13442 181 aaKnown RBP1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 DOK7Q18PE1 504 aa1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 MS4A3Q96HJ5 214 aa1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 PLA2G2EQ9NZK7 142 aa1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 TRIM35Q9UPQ4 493 aa1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 COLQQ9Y215 455 aaPredicted RBP1.39□□□□□ -2.19
RNU4-54P-201ENST00000516428 PSDA5PKW4 1024 aaPredicted RBP1.38□□□□□ -2.19
RNU4-54P-201ENST00000516428 MAP3K13O43283 966 aa1.38□□□□□ -2.19
RNU4-54P-201ENST00000516428 EMP3P54852 163 aa1.38□□□□□ -2.19
RNU4-54P-201ENST00000516428 IRX2Q9BZI1 471 aaPredicted RBP1.38□□□□□ -2.19
RNU4-54P-201ENST00000516428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP1.38□□□□□ -2.19
RNU4-54P-201ENST00000516428 TTLL13PA6NNM8 815 aa1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 VGFO15240 615 aaPredicted RBP1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 SOX12O15370 315 aa1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 TBC1D12O60347 775 aa1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 RGS20O76081 388 aa1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 PYGBP11216 843 aa1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 MNX1P50219 401 aaPredicted RBP1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 ZSWIM6Q9HCJ5 1215 aa1.37□□□□□ -2.19
RNU4-54P-201ENST00000516428 FAM205CA6NFA0 338 aa1.36□□□□□ -2.19
RNU4-54P-201ENST00000516428 PSEN1P49768 467 aa1.36□□□□□ -2.19
RNU4-54P-201ENST00000516428 NUBP1P53384 320 aa1.36□□□□□ -2.19
RNU4-54P-201ENST00000516428 NLRP6P59044 892 aa1.36□□□□□ -2.19
RNU4-54P-201ENST00000516428 RASEFQ8IZ41 740 aa1.36□□□□□ -2.19
RNU4-54P-201ENST00000516428 BMP2KQ9NSY1 1161 aaPredicted RBP1.36□□□□□ -2.19
RNU4-54P-201ENST00000516428 LCE2BO14633 110 aa1.35□□□□□ -2.19
RNU4-54P-201ENST00000516428 RIOK3O14730 519 aaKnown RBP1.35□□□□□ -2.19
RNU4-54P-201ENST00000516428 SLC4A3P48751 1232 aa1.35□□□□□ -2.19
RNU4-54P-201ENST00000516428 IFNL1Q8IU54 200 aa1.35□□□□□ -2.19
RNU4-54P-201ENST00000516428 TMC2Q8TDI7 906 aa1.35□□□□□ -2.19
RNU4-54P-201ENST00000516428 BOLA1Q9Y3E2 137 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms