RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 Q9UF83 564 aa7.36□□□□□ -1.23
VPS33A-204ENST00000540669 PRO0255Q9UI72 69 aa7.36□□□□□ -1.23
VPS33A-204ENST00000540669 RPS10P46783 165 aaKnown RBP7.35□□□□□ -1.23
VPS33A-204ENST00000540669 RHOHQ15669 191 aa7.35□□□□□ -1.23
VPS33A-204ENST00000540669 FAM74A4Q5TZK3 123 aa7.35□□□□□ -1.23
VPS33A-204ENST00000540669 PHLDA1Q8WV24 401 aaPredicted RBP7.35□□□□□ -1.23
VPS33A-204ENST00000540669 DEFB131BA0A096LNP1 70 aa7.34□□□□□ -1.23
VPS33A-204ENST00000540669 PPBPP02775 128 aa7.34□□□□□ -1.23
VPS33A-204ENST00000540669 RAB5AP20339 215 aa7.34□□□□□ -1.23
VPS33A-204ENST00000540669 RPL32P62910 135 aaKnown RBP7.34□□□□□ -1.23
VPS33A-204ENST00000540669 SMIM15Q7Z3B0 74 aa7.34□□□□□ -1.23
VPS33A-204ENST00000540669 NEXN-AS1Q8NBZ9 246 aa7.34□□□□□ -1.23
VPS33A-204ENST00000540669 HHLA3Q9XRX5 114 aa7.34□□□□□ -1.23
VPS33A-204ENST00000540669 TRAV26-1A0A087WT03 109 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 IGHV3-73A0A0B4J1V6 119 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 TRAV26-2A0A0B4J265 109 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 PRSS47A8MTI9 375 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 SMIM17P0DL12 118 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 P0DMU3 169 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 FAM231AP0DMU4 169 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 FAM231CP0DMU5 169 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 TCTAP57738 103 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 SSTP61278 116 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 ZNF56Q15929 161 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 LAMTOR2Q9Y2Q5 125 aa7.33□□□□□ -1.24
VPS33A-204ENST00000540669 IGLV2-18A0A075B6J9 118 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 A0A096LPF7 62 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 TRGV4A0A0C4DH28 118 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 LOC100131303A0A0U1RQF7 123 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 D6R8Y8 96 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 FAM229AH3BQW9 127 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 H7C1H1 209 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 NCR2O95944 276 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 MGPP08493 103 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 POLR2KP53803 58 aaKnown RBP7.32□□□□□ -1.24
VPS33A-204ENST00000540669 TIRAPP58753 221 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 UBE2D3P61077 147 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 UBE2D2P62837 147 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 CEMP1Q6PRD7 247 aaPredicted RBP7.32□□□□□ -1.24
VPS33A-204ENST00000540669 RPL39LQ96EH5 51 aaKnown RBP7.32□□□□□ -1.24
VPS33A-204ENST00000540669 DNAJC30Q96LL9 226 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 MRPL18Q9H0U6 180 aaKnown RBP7.32□□□□□ -1.24
VPS33A-204ENST00000540669 NIT2Q9NQR4 276 aa7.32□□□□□ -1.24
VPS33A-204ENST00000540669 TRBV27A0A0K0K1C4 114 aa7.31□□□□□ -1.24
VPS33A-204ENST00000540669 F5H768 121 aa7.31□□□□□ -1.24
VPS33A-204ENST00000540669 SMKR1H3BMG3 65 aa7.31□□□□□ -1.24
VPS33A-204ENST00000540669 EIF4EBP3O60516 100 aaPredicted RBP7.31□□□□□ -1.24
VPS33A-204ENST00000540669 NPYP01303 97 aa7.31□□□□□ -1.24
VPS33A-204ENST00000540669 ORMDL3Q8N138 153 aa7.31□□□□□ -1.24
VPS33A-204ENST00000540669 ALKBH7Q9BT30 221 aaPredicted RBP7.31□□□□□ -1.24
VPS33A-204ENST00000540669 TRBV7-3A0A075B6L6 115 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 LINC01546A6NGU7 62 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 PAX4O43316 350 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 APCSP02743 223 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 C15orf53Q8NAA6 179 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 C20orf78Q9BR46 151 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 TMEM70Q9BUB7 260 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 APLNQ9ULZ1 77 aa7.3□□□□□ -1.24
VPS33A-204ENST00000540669 KMT2CQ8NEZ4 4911 aaKnown RBP7.29□□□□□ -1.24
VPS33A-204ENST00000540669 TNFRSF6BO95407 300 aa7.29□□□□□ -1.24
VPS33A-204ENST00000540669 PPP1R17O96001 155 aa7.29□□□□□ -1.24
VPS33A-204ENST00000540669 GYPEP15421 78 aa7.29□□□□□ -1.24
VPS33A-204ENST00000540669 HTN3P15516 51 aa7.29□□□□□ -1.24
VPS33A-204ENST00000540669 CKS2P33552 79 aa7.29□□□□□ -1.24
VPS33A-204ENST00000540669 SUMO2P61956 95 aaKnown RBP7.29□□□□□ -1.24
VPS33A-204ENST00000540669 PRELID3AQ96N28 172 aa7.29□□□□□ -1.24
VPS33A-204ENST00000540669 PRADC1Q9BSG0 188 aa7.29□□□□□ -1.24
VPS33A-204ENST00000540669 SDHAF1A6NFY7 115 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 IGLL5B9A064 214 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 F5H697 171 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 TRGC2P03986 189 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 RPL36AP83881 106 aaKnown RBP7.28□□□□□ -1.24
VPS33A-204ENST00000540669 FABP9Q0Z7S8 132 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 OR10J3Q5JRS4 329 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 C18orf32Q8TCD1 76 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 RPL36ALQ969Q0 106 aaKnown RBP7.28□□□□□ -1.24
VPS33A-204ENST00000540669 SMIM2Q9BVW6 85 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 TRAPPC1Q9Y5R8 145 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 ICOSQ9Y6W8 199 aa7.28□□□□□ -1.24
VPS33A-204ENST00000540669 A0A0J9YY99 117 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 LCE6AA0A183 80 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 MRPL23Q16540 153 aaKnown RBP7.27□□□□□ -1.25
VPS33A-204ENST00000540669 KIAA1644Q3SXP7 199 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 NTM-AS1Q6ZSK4 140 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 SH2D6Q7Z4S9 175 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 URB1-AS1Q96HZ7 61 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 DNAH2Q9P225 4427 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 RYR2Q92736 4967 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 KMT2AQ03164 3969 aa7.27□□□□□ -1.25
VPS33A-204ENST00000540669 GAGE12JA6NER3 117 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 LY6G6CO95867 125 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 TSHBP01222 138 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 SRIP30626 198 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 LINC00310P59036 64 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 GAGE1Q13065 139 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 GAGE4Q13068 117 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 GAGE5Q13069 117 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 GAGE13Q4V321 117 aa7.26□□□□□ -1.25
VPS33A-204ENST00000540669 DAZ4Q86SG3 579 aaKnown RBP7.26□□□□□ -1.25
VPS33A-204ENST00000540669 ZNRF2Q8NHG8 242 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms