RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 ORMDL3Q8N138 153 aa13.28□□□□□ -0.28
CHMP4A-201ENST00000347519 PRELID3AQ96N28 172 aa13.28□□□□□ -0.28
CHMP4A-201ENST00000347519 ALKBH7Q9BT30 221 aaPredicted RBP13.28□□□□□ -0.28
CHMP4A-201ENST00000347519 RHOHQ15669 191 aa13.27□□□□□ -0.29
CHMP4A-201ENST00000347519 TNFRSF6BO95407 300 aa13.26□□□□□ -0.29
CHMP4A-201ENST00000347519 GYPEP15421 78 aa13.26□□□□□ -0.29
CHMP4A-201ENST00000347519 SRIP30626 198 aa13.26□□□□□ -0.29
CHMP4A-201ENST00000347519 OR10J3Q5JRS4 329 aa13.26□□□□□ -0.29
CHMP4A-201ENST00000347519 NIT2Q9NQR4 276 aa13.26□□□□□ -0.29
CHMP4A-201ENST00000347519 GAGE12JA6NER3 117 aa13.25□□□□□ -0.29
CHMP4A-201ENST00000347519 H7C1H1 209 aa13.25□□□□□ -0.29
CHMP4A-201ENST00000347519 PPBPP02775 128 aa13.25□□□□□ -0.29
CHMP4A-201ENST00000347519 GAGE1Q13065 139 aa13.25□□□□□ -0.29
CHMP4A-201ENST00000347519 GAGE4Q13068 117 aa13.25□□□□□ -0.29
CHMP4A-201ENST00000347519 GAGE5Q13069 117 aa13.25□□□□□ -0.29
CHMP4A-201ENST00000347519 GAGE13Q4V321 117 aa13.25□□□□□ -0.29
CHMP4A-201ENST00000347519 PLECQ15149 4684 aaKnown RBP13.24□□□□□ -0.29
CHMP4A-201ENST00000347519 TRBV10-1A0A0K0K1A3 114 aa13.24□□□□□ -0.29
CHMP4A-201ENST00000347519 ZNRF2Q8NHG8 242 aa13.24□□□□□ -0.29
CHMP4A-201ENST00000347519 PRADC1Q9BSG0 188 aa13.24□□□□□ -0.29
CHMP4A-201ENST00000347519 STARD9Q9P2P6 4700 aa13.24□□□□□ -0.29
CHMP4A-201ENST00000347519 TRBV6-5A0A0K0K1A5 114 aa13.23□□□□□ -0.29
CHMP4A-201ENST00000347519 LINC00694P0DN24 101 aa13.23□□□□□ -0.29
CHMP4A-201ENST00000347519 IQCJQ1A5X6 159 aa13.22□□□□□ -0.29
CHMP4A-201ENST00000347519 NEGR1Q7Z3B1 354 aa13.22□□□□□ -0.29
CHMP4A-201ENST00000347519 DEFB104AQ8WTQ1 72 aa13.22□□□□□ -0.29
CHMP4A-201ENST00000347519 CSMD3Q7Z407 3707 aa13.22□□□□□ -0.29
CHMP4A-201ENST00000347519 UBE2D3P61077 147 aa13.21□□□□□ -0.29
CHMP4A-201ENST00000347519 UBE2D2P62837 147 aa13.21□□□□□ -0.29
CHMP4A-201ENST00000347519 DNAJC30Q96LL9 226 aa13.21□□□□□ -0.29
CHMP4A-201ENST00000347519 TNFRSF18Q9Y5U5 241 aa13.21□□□□□ -0.29
CHMP4A-201ENST00000347519 TRBV7-3A0A075B6L6 115 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 A0A096LPF7 62 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 IGHV3-38A0A0C4DH36 116 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 LOC389332A0A1B0GUA5 103 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 POLR2KP53803 58 aaKnown RBP13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 SUMO2P61956 95 aaKnown RBP13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 RPL36AP83881 106 aaKnown RBP13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 CEMP1Q6PRD7 247 aaPredicted RBP13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 RPL36ALQ969Q0 106 aaKnown RBP13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 ST20Q9HBF5 79 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 SDHAF1A6NFY7 115 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 C18orf32Q8TCD1 76 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 TMEM70Q9BUB7 260 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 LAMTOR2Q9Y2Q5 125 aa13.2□□□□□ -0.3
CHMP4A-201ENST00000347519 IGLL5B9A064 214 aa13.19□□□□□ -0.3
CHMP4A-201ENST00000347519 H3BNG1 76 aa13.19□□□□□ -0.3
CHMP4A-201ENST00000347519 PPP1R17O96001 155 aa13.19□□□□□ -0.3
CHMP4A-201ENST00000347519 ZFAND6Q6FIF0 208 aa13.19□□□□□ -0.3
CHMP4A-201ENST00000347519 C20orf78Q9BR46 151 aa13.19□□□□□ -0.3
CHMP4A-201ENST00000347519 IGLV2-18A0A075B6J9 118 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 PRSS47A8MTI9 375 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BKO60814 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 NUDT3O95989 172 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BJP06899 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BOP23527 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BBP33778 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BDP58876 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BCP62807 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST2H2BEQ16778 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BHQ93079 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 WWC2-AS2Q96NR7 200 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BNQ99877 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 HIST1H2BMQ99879 126 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 MAP1LC3AQ9H492 121 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 ICOSQ9Y6W8 199 aa13.18□□□□□ -0.3
CHMP4A-201ENST00000347519 C1orf196B1AJZ1 125 aa13.17□□□□□ -0.3
CHMP4A-201ENST00000347519 IFI27P40305 119 aaPredicted RBP13.17□□□□□ -0.3
CHMP4A-201ENST00000347519 URB1-AS1Q96HZ7 61 aa13.17□□□□□ -0.3
CHMP4A-201ENST00000347519 SMIM2Q9BVW6 85 aa13.17□□□□□ -0.3
CHMP4A-201ENST00000347519 MRPL23Q16540 153 aaKnown RBP13.16□□□□□ -0.3
CHMP4A-201ENST00000347519 MUC7Q8TAX7 377 aa13.16□□□□□ -0.3
CHMP4A-201ENST00000347519 TRBV27A0A0K0K1C4 114 aa13.15□□□□□ -0.3
CHMP4A-201ENST00000347519 RPL32P62910 135 aaKnown RBP13.15□□□□□ -0.3
CHMP4A-201ENST00000347519 ATP6V0E2Q8NHE4 81 aa13.15□□□□□ -0.3
CHMP4A-201ENST00000347519 NUPR2A6NF83 97 aa13.14□□□□□ -0.31
CHMP4A-201ENST00000347519 VCYO14598 125 aa13.14□□□□□ -0.31
CHMP4A-201ENST00000347519 TSHBP01222 138 aa13.14□□□□□ -0.31
CHMP4A-201ENST00000347519 PMCHP20382 165 aa13.14□□□□□ -0.31
CHMP4A-201ENST00000347519 NTM-AS1Q6ZSK4 140 aa13.14□□□□□ -0.31
CHMP4A-201ENST00000347519 Q8N8P6 123 aa13.14□□□□□ -0.31
CHMP4A-201ENST00000347519 I3L3M4 83 aa13.13□□□□□ -0.31
CHMP4A-201ENST00000347519 TCAPO15273 167 aa13.13□□□□□ -0.31
CHMP4A-201ENST00000347519 Q0VG73 95 aa13.13□□□□□ -0.31
CHMP4A-201ENST00000347519 APLNQ9ULZ1 77 aa13.13□□□□□ -0.31
CHMP4A-201ENST00000347519 LINC00310P59036 64 aa13.12□□□□□ -0.31
CHMP4A-201ENST00000347519 DAZ4Q86SG3 579 aaKnown RBP13.12□□□□□ -0.31
CHMP4A-201ENST00000347519 NIT1Q86X76 327 aa13.12□□□□□ -0.31
CHMP4A-201ENST00000347519 C15orf53Q8NAA6 179 aa13.12□□□□□ -0.31
CHMP4A-201ENST00000347519 DAZ3Q9NR90 486 aaKnown RBP13.12□□□□□ -0.31
CHMP4A-201ENST00000347519 KMT2CQ8NEZ4 4911 aaKnown RBP13.11□□□□□ -0.31
CHMP4A-201ENST00000347519 PRSS3P2Q8NHM4 247 aa13.11□□□□□ -0.31
CHMP4A-201ENST00000347519 ESRGQ1W209 222 aa13.1□□□□□ -0.31
CHMP4A-201ENST00000347519 LYPD5Q6UWN5 251 aa13.1□□□□□ -0.31
CHMP4A-201ENST00000347519 GTSF1LQ9H1H1 148 aa13.1□□□□□ -0.31
CHMP4A-201ENST00000347519 NXT2Q9NPJ8 142 aaKnown RBP13.1□□□□□ -0.31
CHMP4A-201ENST00000347519 KLK5Q9Y337 293 aaPredicted RBP13.1□□□□□ -0.31
CHMP4A-201ENST00000347519 VPS13DQ5THJ4 4388 aa13.1□□□□□ -0.31
CHMP4A-201ENST00000347519 NUPR1O60356 82 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms