RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 STRAPQ9Y3F4 350 aaKnown RBP2.61□□□□□ -1.99
USP54-217ENST00000498213 LSM5Q9Y4Y9 91 aaKnown RBP2.61□□□□□ -1.99
USP54-217ENST00000498213 ICOSQ9Y6W8 199 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 LY96Q9Y6Y9 160 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 FAM24AA6NFZ4 105 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 HMSDA8MTL9 139 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 PRSS46E5RG02 174 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 H3BP45 60 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 L7N2F9 121 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 BCL2L11O43521 198 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 SYNGR2O43760 224 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 SSSCA1O60232 199 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 MPDU1O75352 247 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 ZNF324O75467 553 aaPredicted RBP2.6□□□□□ -1.99
USP54-217ENST00000498213 CRISP2P16562 243 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 ZNF90Q03938 601 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 ACOT6Q3I5F7 207 aaPredicted RBP2.6□□□□□ -1.99
USP54-217ENST00000498213 SPINK9Q5DT21 86 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 Q6ZRG5 221 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 TMUB2Q71RG4 321 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 NEGR1Q7Z3B1 354 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 KCNRGQ8N5I3 272 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 OR10G9Q8NGN4 311 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 LRRC20Q8TCA0 184 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 PCNPQ8WW12 178 aaKnown RBP2.6□□□□□ -1.99
USP54-217ENST00000498213 RPUSD4Q96CM3 377 aaKnown RBP2.6□□□□□ -1.99
USP54-217ENST00000498213 AQP10Q96PS8 301 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 PFDN5Q99471 154 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 SPXQ9BT56 116 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 ARL6Q9H0F7 186 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 ZNF331Q9NQX6 463 aaPredicted RBP2.6□□□□□ -1.99
USP54-217ENST00000498213 SLC39A9Q9NUM3 307 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 PAIP2BQ9ULR5 123 aaKnown RBP2.6□□□□□ -1.99
USP54-217ENST00000498213 LENEPQ9Y5L5 61 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 DNAH8Q96JB1 4490 aa2.6□□□□□ -1.99
USP54-217ENST00000498213 NACAE9PAV3 2078 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 TRGV2A0A075B6R0 118 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 IGKV1OR2-108A0A075B7D4 117 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 A0A087WTM6 91 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 TRAV8-2A0A0B4J237 113 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 RBAKDNA6NC62 111 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 KLLNB2CW77 178 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 C9JCJ5 164 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 M0R2Z0 102 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 LINC00869P0C866 280 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 HIST1H1EP10412 219 aaKnown RBP2.59□□□□□ -1.99
USP54-217ENST00000498213 IAPPP10997 89 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 S100A11P31949 105 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 TCL1AP56279 114 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 LINC00315P59091 139 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 RHOBP62745 196 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 HIST1H1AQ02539 215 aaPredicted RBP2.59□□□□□ -1.99
USP54-217ENST00000498213 AKR1C1Q04828 323 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 FGL1Q08830 312 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 OR5I1Q13606 314 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 ZNF345Q14585 488 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 ESRGQ1W209 222 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 SPINK13Q1W4C9 94 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 FAM74A1Q5RGS3 127 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 RPL7L1Q6DKI1 246 aaKnown RBP2.59□□□□□ -1.99
USP54-217ENST00000498213 TEX261Q6UWH6 196 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 CYP2G1PQ6ZSU1 146 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 TMEM252Q8N6L7 170 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 OR10P1Q8NGE3 313 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 OR1L4Q8NGR5 311 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 SMIM8Q96KF7 97 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 MRPL32Q9BYC8 188 aaKnown RBP2.59□□□□□ -1.99
USP54-217ENST00000498213 SMIM3Q9BZL3 60 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 RBKSQ9H477 322 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 NOP10Q9NPE3 64 aaKnown RBP2.59□□□□□ -1.99
USP54-217ENST00000498213 KCNIP2Q9NS61 270 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 TMEM14CQ9P0S9 112 aa2.59□□□□□ -1.99
USP54-217ENST00000498213 A0A096LPF7 62 aa2.58□□□□□ -2
USP54-217ENST00000498213 A0A0D9SG52 128 aa2.58□□□□□ -2
USP54-217ENST00000498213 C7orf71A4D174 169 aa2.58□□□□□ -2
USP54-217ENST00000498213 ZNF705GA8MUZ8 300 aaPredicted RBP2.58□□□□□ -2
USP54-217ENST00000498213 E5RGE8 158 aa2.58□□□□□ -2
USP54-217ENST00000498213 TEX46H3BTG2 121 aa2.58□□□□□ -2
USP54-217ENST00000498213 K7EQD1 137 aa2.58□□□□□ -2
USP54-217ENST00000498213 MRPS12O15235 138 aaKnown RBP2.58□□□□□ -2
USP54-217ENST00000498213 SPINK4O60575 86 aa2.58□□□□□ -2
USP54-217ENST00000498213 CST7O76096 145 aa2.58□□□□□ -2
USP54-217ENST00000498213 PFN1P07737 140 aaKnown RBP2.58□□□□□ -2
USP54-217ENST00000498213 METTL15P1P0C7V9 234 aa2.58□□□□□ -2
USP54-217ENST00000498213 IGLC2P0DOY2 106 aa2.58□□□□□ -2
USP54-217ENST00000498213 ORM2P19652 201 aa2.58□□□□□ -2
USP54-217ENST00000498213 RPL12P30050 165 aaKnown RBP2.58□□□□□ -2
USP54-217ENST00000498213 SRIP30626 198 aa2.58□□□□□ -2
USP54-217ENST00000498213 KRTAP12-2P59991 146 aa2.58□□□□□ -2
USP54-217ENST00000498213 KRTAP10-4P60372 401 aaPredicted RBP2.58□□□□□ -2
USP54-217ENST00000498213 LINC01556Q5JQF7 62 aa2.58□□□□□ -2
USP54-217ENST00000498213 ALKAL2Q6UX46 152 aa2.58□□□□□ -2
USP54-217ENST00000498213 TMEM14EPQ6UXP3 125 aa2.58□□□□□ -2
USP54-217ENST00000498213 BAP18Q8IXM2 172 aa2.58□□□□□ -2
USP54-217ENST00000498213 SLC7A5P1Q8MH63 180 aa2.58□□□□□ -2
USP54-217ENST00000498213 EIF4E3Q8N5X7 224 aaKnown RBP2.58□□□□□ -2
USP54-217ENST00000498213 OR10G7Q8NGN6 311 aa2.58□□□□□ -2
USP54-217ENST00000498213 STOML3Q8TAV4 291 aa2.58□□□□□ -2
USP54-217ENST00000498213 PTH2Q96A98 100 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms