RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 F5H768 121 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 SOCS3O14543 225 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 IGLC2P0DOY2 106 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 MIFP14174 115 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 TSPOP30536 169 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 RPL13AP40429 203 aaKnown RBP4.92□□□□□ -1.62
HDAC9-216ENST00000446646 SNRPEP62304 92 aaKnown RBP4.92□□□□□ -1.62
HDAC9-216ENST00000446646 HIST1H1AQ02539 215 aaPredicted RBP4.92□□□□□ -1.62
HDAC9-216ENST00000446646 EIF5AL1Q6IS14 154 aaKnown RBP4.92□□□□□ -1.62
HDAC9-216ENST00000446646 OR10G4Q8NGN3 311 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 OR10G9Q8NGN4 311 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 OR10G7Q8NGN6 311 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 MRPL53Q96EL3 112 aaKnown RBP4.92□□□□□ -1.62
HDAC9-216ENST00000446646 C14orf144Q96I85 54 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 NIT2Q9NQR4 276 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 ZNF331Q9NQX6 463 aaPredicted RBP4.92□□□□□ -1.62
HDAC9-216ENST00000446646 LPAP08519 4548 aa4.92□□□□□ -1.62
HDAC9-216ENST00000446646 TRBV19A0A075B6N1 114 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 A0A0J9YX75 114 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 H3BMM0 161 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 INSP01308 110 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 TPT1P13693 172 aaKnown RBP4.91□□□□□ -1.62
HDAC9-216ENST00000446646 HTN3P15516 51 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 ATP6V0CP27449 155 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 TCTE3Q8IZS6 198 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 CSNK1G2-AS1Q8NCQ2 148 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 CMTM2Q8TAZ6 248 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 BLNKQ8WV28 456 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 RPUSD4Q96CM3 377 aaKnown RBP4.91□□□□□ -1.62
HDAC9-216ENST00000446646 HYLS1Q96M11 299 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 TMEM208Q9BTX3 173 aa4.91□□□□□ -1.62
HDAC9-216ENST00000446646 ZNF471Q9BX82 626 aaPredicted RBP4.91□□□□□ -1.62
HDAC9-216ENST00000446646 ACTR3CQ9C0K3 210 aaPredicted RBP4.91□□□□□ -1.62
HDAC9-216ENST00000446646 TRAV5A0A0B4J249 113 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 TEX48A0A1B0GUV7 120 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 MRPS12O15235 138 aaKnown RBP4.9□□□□□ -1.63
HDAC9-216ENST00000446646 BCL2L11O43521 198 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 CXorf1O96002 111 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 AKR1C3P42330 323 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 EMP1P54849 157 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 RPL32P62910 135 aaKnown RBP4.9□□□□□ -1.63
HDAC9-216ENST00000446646 Q5BKY6 102 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 MORN5Q5VZ52 161 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 RPL7L1Q6DKI1 246 aaKnown RBP4.9□□□□□ -1.63
HDAC9-216ENST00000446646 MIR17HGQ75NE6 70 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 KCNRGQ8N5I3 272 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 RNF182Q8N6D2 247 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 OR8A1Q8NGG7 326 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 RXFP4Q8TDU9 374 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 SLC25A2Q9BXI2 301 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 WFDC1Q9HC57 220 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 TMEM167BQ9NRX6 74 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 C11orf21Q9P2W6 132 aa4.9□□□□□ -1.63
HDAC9-216ENST00000446646 TRAV8-2A0A0B4J237 113 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 CTXND1A0A1B0GTU2 59 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 TMEM189A5PLL7 270 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 UMAD1C9J7I0 102 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 SLC17A3O00476 420 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 EIF3GO75821 320 aaKnown RBP eCLIP4.89□□□□□ -1.63
HDAC9-216ENST00000446646 IGKV3-20P01619 116 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 HBE1P02100 147 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 C1QBP02746 253 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 PYYP10082 97 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 ZNF25P17030 456 aaPredicted RBP4.89□□□□□ -1.63
HDAC9-216ENST00000446646 LEPP41159 167 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 RPS20P60866 119 aaKnown RBP4.89□□□□□ -1.63
HDAC9-216ENST00000446646 ZNF415Q09FC8 603 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 TMEM78Q5T7P6 136 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 NIT1Q86X76 327 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 TMEM256Q8N2U0 113 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 BAALCQ8WXS3 180 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 ODF3Q96PU9 254 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 ZNF586Q9NXT0 402 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 RFNGQ9Y644 331 aa4.89□□□□□ -1.63
HDAC9-216ENST00000446646 IGHV3OR16-12A0A075B7B8 117 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 SMIM9A6NGZ8 99 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 F6UB75 175 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 H3BQ15 152 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 SNRPCP09234 159 aaKnown RBP4.88□□□□□ -1.63
HDAC9-216ENST00000446646 SEC11BP0C7V7 166 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 ARL14EPLP0DKL9 152 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 SUMO2P61956 95 aaKnown RBP4.88□□□□□ -1.63
HDAC9-216ENST00000446646 ZFP69Q49AA0 526 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 GDF5OSQ5U4N7 250 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 DPPA3Q6W0C5 159 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 EIF4E3Q8N5X7 224 aaKnown RBP4.88□□□□□ -1.63
HDAC9-216ENST00000446646 FXYD5Q96DB9 178 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 BTF3L4Q96K17 158 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 FAM167A-AS1Q96KT0 104 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 IGF2BP2-AS1Q96M15 143 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 LINC00477Q96M19 166 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 C20orf144Q9BQM9 153 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 NKX6-2Q9C056 277 aaPredicted RBP4.88□□□□□ -1.63
HDAC9-216ENST00000446646 SH3BGRL3Q9H299 93 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 Q9H3A6 140 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 OTORQ9NRC9 128 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 XCL2Q9UBD3 114 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 LINC00588Q9Y4M8 146 aa4.88□□□□□ -1.63
HDAC9-216ENST00000446646 RBAKDNA6NC62 111 aa4.87□□□□□ -1.63
HDAC9-216ENST00000446646 MAP1LC3B2A6NCE7 125 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms