RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 KIR2DL5AQ8N109 375 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 NUPR1O60356 82 aa12.18□□□□□ -0.46
CIITA-204ENST00000570546 MORN3Q6PF18 240 aaPredicted RBP12.18□□□□□ -0.46
CIITA-204ENST00000570546 C9orf118A6NHY6 69 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 ADAMTSL5Q6ZMM2 481 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 CST9LQ9H4G1 147 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 ANAPC13Q9BS18 74 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 ALPK3Q96L96 1907 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 EP300Q09472 2414 aaPredicted RBP12.17□□□□□ -0.46
CIITA-204ENST00000570546 WT1P19544 449 aaPredicted RBP12.17□□□□□ -0.46
CIITA-204ENST00000570546 IGFL2Q6UWQ7 119 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 C2orf66Q6UXQ4 117 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 TP53TG1Q9Y2A0 90 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 MSRB2Q9Y3D2 182 aa12.17□□□□□ -0.46
CIITA-204ENST00000570546 MYO7BQ6PIF6 2116 aa12.16□□□□□ -0.46
CIITA-204ENST00000570546 OCIAD2Q56VL3 154 aa12.16□□□□□ -0.46
CIITA-204ENST00000570546 IGHV1-69DA0A0B4J2H0 117 aa12.16□□□□□ -0.46
CIITA-204ENST00000570546 SHISA9B4DS77 424 aa12.16□□□□□ -0.46
CIITA-204ENST00000570546 IGHV1-69P01742 117 aa12.16□□□□□ -0.46
CIITA-204ENST00000570546 ATXN8Q156A1 80 aa12.16□□□□□ -0.46
CIITA-204ENST00000570546 GVINP1Q7Z2Y8 2422 aa12.16□□□□□ -0.46
CIITA-204ENST00000570546 MALP21145 153 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 TRGV1A0A0A0MS02 117 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 LCNL1Q6ZST4 164 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 TRPT1Q86TN4 253 aaKnown RBP12.15□□□□□ -0.46
CIITA-204ENST00000570546 DTX2Q86UW9 622 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 IGF2BP2-AS1Q96M15 143 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 CHCHD5Q9BSY4 110 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 CNOT1A5YKK6 2376 aaKnown RBP12.15□□□□□ -0.46
CIITA-204ENST00000570546 SYNJ2BPP57105 145 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 MORN5Q5VZ52 161 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 HTN3P15516 51 aa12.15□□□□□ -0.46
CIITA-204ENST00000570546 TIMM21Q9BVV7 248 aa12.14□□□□□ -0.47
CIITA-204ENST00000570546 DKK4Q9UBT3 224 aa12.14□□□□□ -0.47
CIITA-204ENST00000570546 RPL36AP83881 106 aaKnown RBP12.14□□□□□ -0.47
CIITA-204ENST00000570546 FAM120AOSQ5T036 256 aa12.14□□□□□ -0.47
CIITA-204ENST00000570546 BVES-AS1Q5T3Y7 98 aa12.14□□□□□ -0.47
CIITA-204ENST00000570546 RPL36ALQ969Q0 106 aaKnown RBP12.14□□□□□ -0.47
CIITA-204ENST00000570546 DIDO1Q9BTC0 2240 aaKnown RBP12.14□□□□□ -0.47
CIITA-204ENST00000570546 LINC01356Q8N9X3 169 aa12.14□□□□□ -0.47
CIITA-204ENST00000570546 GTSF1LQ9H1H1 148 aa12.14□□□□□ -0.47
CIITA-204ENST00000570546 TMEM131Q92545 1883 aa12.14□□□□□ -0.47
CIITA-204ENST00000570546 NDUFS8O00217 210 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 ANXA2RQ3ZCQ2 193 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 TMEM141Q96I45 108 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 SPXQ9BT56 116 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 DOCK7Q96N67 2140 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 C22orf46C9J442 243 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 INSP01308 110 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 UNQ6494/PRO21346Q6UXR6 183 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 NDUFA4O00483 81 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 MSMBP08118 114 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 LINC00158P58513 81 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 KMT2EQ8IZD2 1858 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 GP9P14770 177 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 CRIP3Q6Q6R5 217 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 PATE2Q6UY27 113 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 RASL10AQ92737 203 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 RITA1Q96K30 269 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 SAP30O75446 220 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 NSUN5P1Q3KNT7 163 aa12.13□□□□□ -0.47
CIITA-204ENST00000570546 MYMXA0A1B0GTQ4 84 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 IGHV3-53P01767 116 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 NDUFS7O75251 213 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 SLC25A16P16260 332 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 CMC4P56277 68 aaPredicted RBP12.12□□□□□ -0.47
CIITA-204ENST00000570546 PRSS33Q8NF86 280 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 HLA-DMBP28068 263 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 LY6G5BQ8NDX9 201 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 Q5PR19 223 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 ZNF747Q9BV97 191 aa12.12□□□□□ -0.47
CIITA-204ENST00000570546 GPR179Q6PRD1 2367 aa12.11□□□□□ -0.47
CIITA-204ENST00000570546 Q6ZPA2 131 aa12.11□□□□□ -0.47
CIITA-204ENST00000570546 PHLDA1Q8WV24 401 aaPredicted RBP12.11□□□□□ -0.47
CIITA-204ENST00000570546 PRADC1Q9BSG0 188 aa12.11□□□□□ -0.47
CIITA-204ENST00000570546 MRPL35Q9NZE8 188 aaKnown RBP12.11□□□□□ -0.47
CIITA-204ENST00000570546 PMVKQ15126 192 aa12.11□□□□□ -0.47
CIITA-204ENST00000570546 K7EP34 96 aa12.11□□□□□ -0.47
CIITA-204ENST00000570546 EGR2P11161 476 aaPredicted RBP12.11□□□□□ -0.47
CIITA-204ENST00000570546 KLK9Q9UKQ9 250 aa12.11□□□□□ -0.47
CIITA-204ENST00000570546 HOXB4P17483 251 aaPredicted RBP12.1□□□□□ -0.47
CIITA-204ENST00000570546 DEFB131AP59861 70 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 SPINK13Q1W4C9 94 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 DYNAPQ8N1N2 210 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 KLHL30-AS1Q8NEE0 82 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 SPRY4Q9C004 299 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 DKK2Q9UBU2 259 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 C2orf82Q6UX34 121 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 SMIM2Q9BVW6 85 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 DENND4AQ7Z401 1863 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 I3L2K1 104 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 ZFAND6Q6FIF0 208 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 ODF3L1Q8IXM7 274 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 FAM167A-AS1Q96KT0 104 aa12.1□□□□□ -0.47
CIITA-204ENST00000570546 A0A1W2PNU3 283 aaPredicted RBP12.09□□□□□ -0.47
CIITA-204ENST00000570546 UBE2E2Q96LR5 201 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 TDRG1Q3Y452 100 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 GAGE2BQ13066 116 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 GAGE2EQ4V326 116 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 C1orf159Q96HA4 380 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms