RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 SORL1Q92673 2214 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 TRAV8-2A0A0B4J237 113 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 TAS2R60P59551 318 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 FAM74A3Q4VXF1 159 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 CST9LP1Q5W188 147 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 IQCF2Q8IXL9 164 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 BLNKQ8WV28 456 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 SMIM12Q96EX1 92 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 LINC00477Q96M19 166 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 ATG101Q9BSB4 218 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 EIF5A2Q9GZV4 153 aaKnown RBP6.18□□□□□ -1.42
SYNE1-225ENST00000481502 KLF12Q9Y4X4 402 aa6.18□□□□□ -1.42
SYNE1-225ENST00000481502 GGTLC3B5MD39 225 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 DIRC3C9JPN6 131 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 SLC17A3O00476 420 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 DUSP14O95147 198 aaKnown RBP6.17□□□□□ -1.42
SYNE1-225ENST00000481502 TCRAP04437 139 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 EDN2P20800 178 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 ICAM4Q14773 271 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 FOXI2Q6ZQN5 318 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 C9orf47Q6ZRZ4 202 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 GTSCR1Q86UQ5 136 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 TMEM75Q8N9X5 138 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 ODF3Q96PU9 254 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 SLC35B3Q9H1N7 401 aa6.17□□□□□ -1.42
SYNE1-225ENST00000481502 YTHDF2Q9Y5A9 579 aaKnown RBP6.17□□□□□ -1.42
SYNE1-225ENST00000481502 A8MTW9 85 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 OR11H12B2RN74 326 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 IGLL1P15814 213 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 CNN1P51911 297 aaKnown RBP6.16□□□□□ -1.42
SYNE1-225ENST00000481502 CD81P60033 236 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 GUCA2BQ16661 112 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 HAGHQ16775 308 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 SAPCD1Q5SSQ6 148 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 KPRPQ5T749 579 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-225ENST00000481502 SAMD5Q5TGI4 173 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 EBLN2Q6P2I7 272 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 GBGT1Q8N5D6 347 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 CYB561D1Q8N8Q1 229 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 OR8A1Q8NGG7 326 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 OR10J6PQ8NGY7 276 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 FMC1Q96HJ9 113 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 SAV1Q9H4B6 383 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-225ENST00000481502 ZFP30Q9Y2G7 519 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 LY96Q9Y6Y9 160 aa6.16□□□□□ -1.42
SYNE1-225ENST00000481502 A0A0J9YX75 114 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 A0A1B0GV50 99 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 IZUMO1RA6ND01 250 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 A8MZ25 164 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 PEX7O00628 323 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 EIF3GO75821 320 aaKnown RBP eCLIP6.15□□□□□ -1.42
SYNE1-225ENST00000481502 HLA-DRB4P13762 266 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 UBE2G2P60604 165 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 NUTF2P61970 127 aaKnown RBP6.15□□□□□ -1.42
SYNE1-225ENST00000481502 TMEM183BQ1AE95 376 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 PSMG4Q5JS54 123 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 TOR2AQ5JU69 321 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 COX8CQ7Z4L0 72 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 EXOC3-AS1Q8N2X6 119 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 ZNF738Q8NE65 137 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 C2CD4CQ8TF44 421 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 LINC00052Q96N35 136 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 MAP6D1Q9H9H5 199 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 BIN3Q9NQY0 253 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 C19orf73Q9NVV2 129 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 HLA-DRB4X5D2U9 266 aa6.15□□□□□ -1.42
SYNE1-225ENST00000481502 IGKV3-7A0A075B6H7 116 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 C9JCJ5 164 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 NPIPB6E9PJ23 425 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 M0R3E3 92 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 AMBPP02760 352 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 SRP19P09132 144 aaKnown RBP6.14□□□□□ -1.43
SYNE1-225ENST00000481502 ZNF688P0C7X2 276 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 ATP5G3P48201 142 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 TFPI2P48307 235 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 DEFB131AP59861 70 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 UBE2G1P62253 170 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 ODF3L2Q3SX64 289 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 TMEM78Q5T7P6 136 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 WFDC3Q8IUB2 231 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 PCNPQ8WW12 178 aaKnown RBP6.14□□□□□ -1.43
SYNE1-225ENST00000481502 RARRES2Q99969 163 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 NDFIP1Q9BT67 221 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 ZNF492Q9P255 531 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 TRRAPQ9Y4A5 3859 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 ANK2Q01484 3957 aa6.14□□□□□ -1.43
SYNE1-225ENST00000481502 KRBOX1C9JBD0 128 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 H3BMM0 161 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 H3BTX0 84 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 CRISP2P16562 243 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 TSPOP30536 169 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 AKR1C3P42330 323 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 SMCPP49901 116 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-225ENST00000481502 ZNF138P52744 262 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 FLI1Q01543 452 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-225ENST00000481502 SOHLH1Q5JUK2 328 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 MORN3Q6PF18 240 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-225ENST00000481502 GOLT1AQ6ZVE7 132 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 COMMD7Q86VX2 200 aa6.13□□□□□ -1.43
SYNE1-225ENST00000481502 APRG1Q8IVJ8 170 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms