RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CXCL1P09341 107 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 S100A4P26447 101 aaKnown RBP6.48□□□□□ -1.37
USP54-203ENST00000418501 TCL1AP56279 114 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 Q8N2B8 174 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 OR1N2Q8NGR9 330 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 TET2Q6N021 2002 aaPredicted RBP6.48□□□□□ -1.37
USP54-203ENST00000418501 FRYLO94915 3013 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 ACTL10Q5JWF8 245 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 ZNF702PQ9H963 129 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 ZNF462Q96JM2 2506 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 CACNG7P62955 275 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 MRPL54Q6P161 138 aaKnown RBP6.47□□□□□ -1.37
USP54-203ENST00000418501 GLMPQ8WWB7 406 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 KCNS1Q96KK3 526 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 TPPP3Q9BW30 176 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 IGHV3-66A0A0C4DH42 116 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 F8W735 103 aaPredicted RBP6.47□□□□□ -1.37
USP54-203ENST00000418501 RNASE1P07998 156 aaKnown RBP6.47□□□□□ -1.37
USP54-203ENST00000418501 TRGC1P0CF51 173 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 WIPF2Q8TF74 440 aaPredicted RBP6.47□□□□□ -1.37
USP54-203ENST00000418501 AKAP6Q13023 2319 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 PRRC2CQ9Y520 2896 aaKnown RBP6.47□□□□□ -1.37
USP54-203ENST00000418501 HIGD1CA8MV81 97 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 CFHR3Q02985 330 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 PRR25Q96S07 402 aa6.47□□□□□ -1.37
USP54-203ENST00000418501 TSSC4Q9Y5U2 329 aaPredicted RBP6.47□□□□□ -1.37
USP54-203ENST00000418501 TRAV2A0A0B4J234 112 aa6.46□□□□□ -1.37
USP54-203ENST00000418501 DNAJC9-AS1A6NH13 148 aa6.46□□□□□ -1.37
USP54-203ENST00000418501 GPX1P07203 203 aa6.46□□□□□ -1.37
USP54-203ENST00000418501 DDTP30046 118 aa6.46□□□□□ -1.37
USP54-203ENST00000418501 DUX5Q96PT3 197 aa6.46□□□□□ -1.37
USP54-203ENST00000418501 RNF114Q9Y508 228 aa6.46□□□□□ -1.37
USP54-203ENST00000418501 IGHV3-49A0A0A0MS15 119 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 K7EN84 100 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 TCF21O43680 179 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 DMRTA1Q5VZB9 504 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 IGHV3OR16-13A0A075B7E8 117 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 IGHV3OR16-8A0A075B7F1 116 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 IGHV3-74A0A0B4J1X5 117 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 RPLP1P05386 114 aaKnown RBP6.46□□□□□ -1.38
USP54-203ENST00000418501 PMCHP20382 165 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 RNF152Q8N8N0 203 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 KLHL30-AS1Q8NEE0 82 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 TRBV20OR9-2A0A075B6H5 130 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 IGKV2-40A0A087WW87 121 aaPredicted RBP6.46□□□□□ -1.38
USP54-203ENST00000418501 TRAV25A0A0B4J276 109 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 FAM181BA6NEQ2 426 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 A8MWP6 167 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 MRPS12O15235 138 aaKnown RBP6.46□□□□□ -1.38
USP54-203ENST00000418501 IGKV2D-40P01614 121 aaPredicted RBP6.46□□□□□ -1.38
USP54-203ENST00000418501 CAMPP49913 170 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 OR10J3Q5JRS4 329 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 FER1L6-AS1Q8NA97 138 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 PGLYRP4Q96LB8 373 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 KLK15Q9H2R5 256 aa6.46□□□□□ -1.38
USP54-203ENST00000418501 M0R3E3 92 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 NUTF2P61970 127 aaKnown RBP6.45□□□□□ -1.38
USP54-203ENST00000418501 C9orf47Q6ZRZ4 202 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 SGK494Q96LW2 274 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 LINC00479Q96M42 142 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 AMBPP02760 352 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 RAX2Q96IS3 184 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 MLST8Q9BVC4 326 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 MGAQ8IWI9 3026 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 WDFY4Q6ZS81 3184 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 C20orf202A1L168 122 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 NDUFA7O95182 113 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 HOXD3P31249 432 aaPredicted RBP6.45□□□□□ -1.38
USP54-203ENST00000418501 PKIAP61925 76 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 WFDC3Q8IUB2 231 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 A0A0C4DFX4 3053 aa6.45□□□□□ -1.38
USP54-203ENST00000418501 TCAPO15273 167 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 SH2D1AO60880 128 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 SMIM17P0DL12 118 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 SYNJ2BPP57105 145 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 IL17RELQ6ZVW7 336 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 SYT8Q8NBV8 401 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 C16orf95Q9H693 158 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 SPINK4O60575 86 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 PPP1R17O96001 155 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 PPBPP02775 128 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 ASIPP42127 132 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 LCNL1Q6ZST4 164 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 NUP35Q8NFH5 326 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BKO60814 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BJP06899 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BOP23527 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BBP33778 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BDP58876 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HILS1P60008 231 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BCP62807 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST2H2BEQ16778 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BHQ93079 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 ODF3Q96PU9 254 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BNQ99877 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 HIST1H2BMQ99879 126 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 ARHGAP32A7KAX9 2087 aa6.44□□□□□ -1.38
USP54-203ENST00000418501 C19orf71A6NCJ1 209 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms