RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 H2AFB2P0C5Z0 115 aa16.02■□□□□ 0.16
CLN3-215ENST00000565236 CXCL3P19876 107 aa16.02■□□□□ 0.16
CLN3-215ENST00000565236 PSG3Q16557 428 aa16.02■□□□□ 0.16
CLN3-215ENST00000565236 LINC00305Q7Z4B0 112 aa16.02■□□□□ 0.16
CLN3-215ENST00000565236 PPP1R14DQ9NXH3 145 aa16.02■□□□□ 0.16
CLN3-215ENST00000565236 COX7A2P2O60397 106 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 CAV2P51636 162 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 RHOBP62745 196 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 HIST1H1AQ02539 215 aaPredicted RBP16.01■□□□□ 0.15
CLN3-215ENST00000565236 RAB31Q13636 194 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 OXA1LQ15070 435 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 OR8A1Q8NGG7 326 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 FAM210BQ96KR6 192 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 C2orf50Q96LR7 162 aa16.01■□□□□ 0.15
CLN3-215ENST00000565236 CRXO43186 299 aaPredicted RBP16■□□□□ 0.15
CLN3-215ENST00000565236 HTN3P15516 51 aa16■□□□□ 0.15
CLN3-215ENST00000565236 PVALBP20472 110 aaPredicted RBP16■□□□□ 0.15
CLN3-215ENST00000565236 B2MP61769 119 aa16■□□□□ 0.15
CLN3-215ENST00000565236 POM121L12Q8N7R1 296 aa16■□□□□ 0.15
CLN3-215ENST00000565236 MGST2Q99735 147 aa16■□□□□ 0.15
CLN3-215ENST00000565236 FAM240BA0A1B0GVZ2 78 aa15.99■□□□□ 0.15
CLN3-215ENST00000565236 ZNF705GA8MUZ8 300 aaPredicted RBP15.99■□□□□ 0.15
CLN3-215ENST00000565236 BOLA2-SMG1P6H3BVE0 249 aa15.99■□□□□ 0.15
CLN3-215ENST00000565236 MRPS12O15235 138 aaKnown RBP15.99■□□□□ 0.15
CLN3-215ENST00000565236 CST7O76096 145 aa15.99■□□□□ 0.15
CLN3-215ENST00000565236 DAD1P61803 113 aa15.99■□□□□ 0.15
CLN3-215ENST00000565236 BPIFA4PQ86YQ2 179 aa15.99■□□□□ 0.15
CLN3-215ENST00000565236 BAP18Q8IXM2 172 aa15.99■□□□□ 0.15
CLN3-215ENST00000565236 FAM24AA6NFZ4 105 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 CXCL2P19875 107 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 CAMLGP49069 296 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 C10orf113Q5VZT2 155 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 MZT2BQ6NZ67 158 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 LCN15Q6UWW0 184 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 Q6ZRG5 221 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 TMEM37Q8WXS4 190 aa15.98■□□□□ 0.15
CLN3-215ENST00000565236 RPUSD4Q96CM3 377 aaKnown RBP15.98■□□□□ 0.15
CLN3-215ENST00000565236 TRAV12-2A0A075B6T6 113 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 PRM2P04554 102 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 SNRPCP09234 159 aaKnown RBP15.97■□□□□ 0.15
CLN3-215ENST00000565236 S100A10P60903 97 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 LINC00299Q6ZSB3 139 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 NRARPQ7Z6K4 114 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 C11orf1Q9H5F2 150 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 DNAJC4Q9NNZ3 241 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 ZNF331Q9NQX6 463 aaPredicted RBP15.97■□□□□ 0.15
CLN3-215ENST00000565236 UQCC1Q9NVA1 299 aa15.97■□□□□ 0.15
CLN3-215ENST00000565236 LINC01587Q99440 93 aa15.96■□□□□ 0.15
CLN3-215ENST00000565236 SLC50A1Q9BRV3 221 aa15.96■□□□□ 0.15
CLN3-215ENST00000565236 PRB4P10163 310 aaPredicted RBP15.95■□□□□ 0.14
CLN3-215ENST00000565236 OPCMLQ14982 345 aa15.95■□□□□ 0.14
CLN3-215ENST00000565236 S100ZQ8WXG8 99 aa15.95■□□□□ 0.14
CLN3-215ENST00000565236 LYRM9A8MSI8 78 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 TSPOP30536 169 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 S100A11P31949 105 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 SULT1A1P50225 295 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 MORN5Q5VZ52 161 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 MIC13Q5XKP0 118 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 UBE2DNLQ8IWF7 75 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 TMEM256Q8N2U0 113 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 LYRM2Q9NU23 88 aaPredicted RBP15.94■□□□□ 0.14
CLN3-215ENST00000565236 WDR83OSQ9Y284 106 aa15.94■□□□□ 0.14
CLN3-215ENST00000565236 H3BTX0 84 aa15.93■□□□□ 0.14
CLN3-215ENST00000565236 IL15RAQ13261 267 aa15.93■□□□□ 0.14
CLN3-215ENST00000565236 RAB32Q13637 225 aa15.93■□□□□ 0.14
CLN3-215ENST00000565236 STX12Q86Y82 276 aa15.93■□□□□ 0.14
CLN3-215ENST00000565236 OR1L4Q8NGR5 311 aa15.93■□□□□ 0.14
CLN3-215ENST00000565236 HTN1P15515 57 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 AZU1P20160 251 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 CDKN1BP46527 198 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 HBG1P69891 147 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 HBG2P69892 147 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 ASAH1Q13510 395 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 VWC2Q2TAL6 325 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 TMEM252Q8N6L7 170 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 PXMP4Q9Y6I8 212 aa15.92■□□□□ 0.14
CLN3-215ENST00000565236 UBE2L5PA0A1B0GUS4 154 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 IGSF23A1L1A6 192 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 SLC17A3O00476 420 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 IGLC2P0DOY2 106 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 DEFB130BP0DP73 79 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 DEFB130AP0DP74 79 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 RPL29P47914 159 aaKnown RBP15.91■□□□□ 0.14
CLN3-215ENST00000565236 TAS2R60P59551 318 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 BAXQ07812 192 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 TMEM88Q6PEY1 159 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 OR10J6PQ8NGY7 276 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 PFDN5Q99471 154 aa15.91■□□□□ 0.14
CLN3-215ENST00000565236 HECTD4Q9Y4D8 3996 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 TRAV5A0A0B4J249 113 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 H3BQ15 152 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 M0R2N4 97 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 GUK1Q16774 197 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 ATP6V1FQ16864 119 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 LINC00336Q6ZUF6 198 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 GPN1Q9HCN4 374 aaPredicted RBP15.9■□□□□ 0.14
CLN3-215ENST00000565236 SLC39A9Q9NUM3 307 aa15.9■□□□□ 0.14
CLN3-215ENST00000565236 ENKURQ8TC29 256 aa15.89■□□□□ 0.13
CLN3-215ENST00000565236 SAT2Q96F10 170 aaPredicted RBP15.89■□□□□ 0.13
CLN3-215ENST00000565236 PRAC2D3DTV9 90 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms