RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RRAS2P62070 204 aaPredicted RBP8.19□□□□□ -1.1
USP3-220ENST00000561381 ZNF575Q86XF7 245 aa8.19□□□□□ -1.1
USP3-220ENST00000561381 SRRQ9GZT4 340 aa8.19□□□□□ -1.1
USP3-220ENST00000561381 HIGD1AQ9Y241 93 aa8.19□□□□□ -1.1
USP3-220ENST00000561381 CCDC160A6NGH7 325 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 LYRM9A8MSI8 78 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 BOLA2-SMG1P6H3BVE0 249 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 HYPMO75409 117 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 METTL15P1P0C7V9 234 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 RPL7P18124 248 aaKnown RBP8.18□□□□□ -1.1
USP3-220ENST00000561381 CXCL3P19876 107 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 PLP1P60201 277 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 RAP2BP61225 183 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 HIST1H1AQ02539 215 aaPredicted RBP8.18□□□□□ -1.1
USP3-220ENST00000561381 BAK1Q16611 211 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 PATE2Q6UY27 113 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 DEDD2Q8WXF8 326 aa8.18□□□□□ -1.1
USP3-220ENST00000561381 RYR1P21817 5038 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 LINC00854A0A1B0GVQ3 168 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 F5H768 121 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 NDUFB6O95139 128 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 SNRPCP09234 159 aaKnown RBP8.17□□□□□ -1.1
USP3-220ENST00000561381 S100A7P31151 101 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 UBE2MP61081 183 aaKnown RBP8.17□□□□□ -1.1
USP3-220ENST00000561381 RHOBP62745 196 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 SLC38A11Q08AI6 406 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 C1orf134Q5TEV5 83 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 TMEM14EPQ6UXP3 125 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 C15orf53Q8NAA6 179 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 OR8A1Q8NGG7 326 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 SMIM8Q96KF7 97 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 LINC01587Q99440 93 aa8.17□□□□□ -1.1
USP3-220ENST00000561381 A0A087X0K7 114 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 MRPS12O15235 138 aaKnown RBP8.16□□□□□ -1.1
USP3-220ENST00000561381 SCGB1D2O95969 90 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 OR4E1P0C645 316 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 HTN1P15515 57 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 ANXA7P20073 488 aaKnown RBP8.16□□□□□ -1.1
USP3-220ENST00000561381 TSPOP30536 169 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 DLK1P80370 383 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 ARL16Q0P5N6 197 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 PSG3Q16557 428 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 ARL6Q9H0F7 186 aa8.16□□□□□ -1.1
USP3-220ENST00000561381 RBM38Q9H0Z9 239 aaKnown RBP8.16□□□□□ -1.1
USP3-220ENST00000561381 EREGO14944 169 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 NUDT3O95989 172 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 BTCP35070 178 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 TAS2R60P59551 318 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 B2MP61769 119 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 SELENOTP62341 195 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 KIR3DS1Q14943 382 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 IAH1Q2TAA2 248 aaPredicted RBP8.15□□□□□ -1.1
USP3-220ENST00000561381 SOHLH1Q5JUK2 328 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 SPANXN2Q5MJ10 180 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 OR10P1Q8NGE3 313 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 ZNRF2Q8NHG8 242 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 LRRC20Q8TCA0 184 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 RPUSD4Q96CM3 377 aaKnown RBP8.15□□□□□ -1.1
USP3-220ENST00000561381 SDHCQ99643 169 aaPredicted RBP8.15□□□□□ -1.1
USP3-220ENST00000561381 ATG101Q9BSB4 218 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 PARD6GQ9BYG4 376 aaPredicted RBP8.15□□□□□ -1.1
USP3-220ENST00000561381 KRTAP4-5Q9BYR2 181 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 ARV1Q9H2C2 271 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 NPVFQ9HCQ7 196 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 PPP1R14DQ9NXH3 145 aa8.15□□□□□ -1.1
USP3-220ENST00000561381 RCL1Q9Y2P8 373 aaKnown RBP8.15□□□□□ -1.1
USP3-220ENST00000561381 H3BTX0 84 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 K7EPK0 472 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 INPP1P49441 399 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 C4orf46Q504U0 113 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 MORN5Q5VZ52 161 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 TRIQKQ629K1 86 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 TEPPQ6URK8 271 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 ZBTB8BQ8NAP8 495 aaPredicted RBP8.14□□□□□ -1.11
USP3-220ENST00000561381 NOP10Q9NPE3 64 aaKnown RBP8.14□□□□□ -1.11
USP3-220ENST00000561381 ZNF331Q9NQX6 463 aaPredicted RBP8.14□□□□□ -1.11
USP3-220ENST00000561381 GSKIPQ9P0R6 139 aa8.14□□□□□ -1.11
USP3-220ENST00000561381 ABCA13Q86UQ4 5058 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 NAP1L6A6NFF2 107 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 CBY3A6NI87 242 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 PRAC2D3DTV9 90 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 FNDC10F2Z333 226 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 SLC17A3O00476 420 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 AGPAT2O15120 278 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 ATP5G1P05496 136 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 CDKN1BP46527 198 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 ATP5G3P48201 142 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 FAM3BP58499 235 aaPredicted RBP8.13□□□□□ -1.11
USP3-220ENST00000561381 LINC00305Q7Z4B0 112 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 TMEM256Q8N2U0 113 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 RNASE8Q8TDE3 154 aaKnown RBP8.13□□□□□ -1.11
USP3-220ENST00000561381 RNF141Q8WVD5 230 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 C16orf74Q96GX8 76 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 MGAT4CQ9UBM8 478 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 LINC00588Q9Y4M8 146 aa8.13□□□□□ -1.11
USP3-220ENST00000561381 NBDYA0A0U1RRE5 68 aa8.12□□□□□ -1.11
USP3-220ENST00000561381 C7orf66A4D0T2 115 aa8.12□□□□□ -1.11
USP3-220ENST00000561381 CCSO14618 274 aa8.12□□□□□ -1.11
USP3-220ENST00000561381 GOSR2O14653 212 aa8.12□□□□□ -1.11
USP3-220ENST00000561381 TSC22D2O75157 780 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms