RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 LCE6AA0A183 80 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 SLC17A3O00476 420 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 PTTG1O95997 202 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 RPL29P47914 159 aaKnown RBP8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 B2MP61769 119 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 FCN2Q15485 313 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 ATP6V1FQ16864 119 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 PXDC1Q5TGL8 231 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 EBLN2Q6P2I7 272 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 AMTNQ6UX39 209 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF738Q8NE65 137 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 SMIM3Q9BZL3 60 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 SLC25A31Q9H0C2 315 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 C11orf68Q9H3H3 251 aaKnown RBP8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 RFNGQ9Y644 331 aa8.37□□□□□ -1.07
CCDC88C-208ENST00000554165 DNAH1Q9P2D7 4330 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 IGHV3OR16-12A0A075B7B8 117 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF705FA8MVS1 300 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 PRAC2D3DTV9 90 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 S100A7P31151 101 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 CNN1P51911 297 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 NUTF2P61970 127 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 PSG9Q00887 426 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 PSG3Q16557 428 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 TMEM41BQ5BJD5 291 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 SPATA31B1PQ5VZV4 182 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 CEMP1Q6PRD7 247 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 Q6ZRG5 221 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 OR11H7Q8NGC8 314 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 C11orf45Q8TAV5 145 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 LRRC20Q8TCA0 184 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 CHAC2Q8WUX2 184 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 NPCDR1Q9BY65 106 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 MFFQ9GZY8 342 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 WFDC1Q9HC57 220 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 LYSTQ99698 3801 aa8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 PLECQ15149 4684 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-208ENST00000554165 ALMS1Q8TCU4 4167 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 A8MTW9 85 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 M0R2Z0 102 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 PRM2P04554 102 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 IGLC2P0DOY2 106 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 Q5BKY6 102 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 SAMD13Q5VXD3 122 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF767PQ75MW2 155 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 BPIFA4PQ86YQ2 179 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 C1orf158Q8N1D5 194 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 PHLDA1Q8WV24 401 aaPredicted RBP8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 CLUHP3Q96NS8 147 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF331Q9NQX6 463 aaPredicted RBP8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF586Q9NXT0 402 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 CELA1Q9UNI1 258 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 HSPB11Q9Y547 144 aa8.35□□□□□ -1.07
CCDC88C-208ENST00000554165 PYYP10082 97 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 MIFP14174 115 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 RPL12P30050 165 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 HIST1H1AQ02539 215 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 SPINK13Q1W4C9 94 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 ZNF705AQ6ZN79 300 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 S100A7AQ86SG5 101 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 OR8A1Q8NGG7 326 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 OR1L4Q8NGR5 311 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 RPUSD4Q96CM3 377 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 SAT2Q96F10 170 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 ATP5SQ99766 215 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 C1QTNF4Q9BXJ3 329 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 PARD6GQ9BYG4 376 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 WDR61Q9GZS3 305 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 MED28Q9H204 178 aa8.34□□□□□ -1.07
CCDC88C-208ENST00000554165 CRXO43186 299 aaPredicted RBP8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 MPDU1O75352 247 aa8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 EIF3GO75821 320 aaKnown RBP eCLIP8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 EMP1P54849 157 aa8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 MIR17HGQ75NE6 70 aa8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 BAP18Q8IXM2 172 aa8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 SLC25A2Q9BXI2 301 aa8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 HRH4Q9H3N8 390 aa8.33□□□□□ -1.08
CCDC88C-208ENST00000554165 TRAV12-2A0A075B6T6 113 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 NUPR2A6NF83 97 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 NDUFB4O95168 129 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 RHOBP62745 196 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 KIR3DS1Q14943 382 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 LCN15Q6UWW0 184 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 FAM167A-AS1Q96KT0 104 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 PFDN5Q99471 154 aa8.32□□□□□ -1.08
CCDC88C-208ENST00000554165 ZNF705GA8MUZ8 300 aaPredicted RBP8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 M0R3E3 92 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 DUSP14O95147 198 aaKnown RBP8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 PET100P0DJ07 73 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 CXCL2P19875 107 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 C12orf74Q32Q52 190 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 Q6ZTC4 211 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 BLNKQ8WV28 456 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 IGF2BP2-AS1Q96M15 143 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 RNF24Q9Y225 148 aa8.31□□□□□ -1.08
CCDC88C-208ENST00000554165 TRBV19A0A075B6N1 114 aa8.3□□□□□ -1.08
CCDC88C-208ENST00000554165 BOLA2-SMG1P6H3BVE0 249 aa8.3□□□□□ -1.08
CCDC88C-208ENST00000554165 FFAR4Q5NUL3 377 aa8.3□□□□□ -1.08
CCDC88C-208ENST00000554165 EXOC3-AS1Q8N2X6 119 aa8.3□□□□□ -1.08
CCDC88C-208ENST00000554165 NEU1Q99519 415 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms