RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CYCSP99999 105 aaKnown RBP10.23□□□□□ -0.77
USP28-209ENST00000540925 PSG9Q00887 426 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 NHLH2Q02577 135 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 RAB31Q13636 194 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 EBLN2Q6P2I7 272 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 RNF126Q9BV68 326 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 MFFQ9GZY8 342 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 DNAJC4Q9NNZ3 241 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 DNAH10Q8IVF4 4471 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 COX7A2P2O60397 106 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 JTBO76095 146 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 IGLC2P0DOY2 106 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 HLA-DMBP28068 263 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 C10orf113Q5VZT2 155 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 OR4B1Q8NGF8 309 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 PPP1R1CQ8WVI7 109 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 SLC39A9Q9NUM3 307 aa10.22□□□□□ -0.77
USP28-209ENST00000540925 MPDU1O75352 247 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 RLN2P04090 185 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 CNN1P51911 297 aaKnown RBP10.21□□□□□ -0.77
USP28-209ENST00000540925 FXYD7P58549 80 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 B2MP61769 119 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 BAXQ07812 192 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 PSG3Q16557 428 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 LRRC37A5PQ49AS3 106 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 LCN15Q6UWW0 184 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 Q6ZRG5 221 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 BPIFA4PQ86YQ2 179 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 C1orf158Q8N1D5 194 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 OR11H7Q8NGC8 314 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 OR5C1Q8NGR4 320 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 LINC00476Q8WZB0 136 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 SAT2Q96F10 170 aaPredicted RBP10.21□□□□□ -0.77
USP28-209ENST00000540925 NPCDR1Q9BY65 106 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 SLC25A31Q9H0C2 315 aa10.21□□□□□ -0.77
USP28-209ENST00000540925 ZNF331Q9NQX6 463 aaPredicted RBP10.21□□□□□ -0.77
USP28-209ENST00000540925 H3BQ15 152 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 SLC17A3O00476 420 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 CRXO43186 299 aaPredicted RBP10.2□□□□□ -0.78
USP28-209ENST00000540925 SSNA1O43805 119 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 MPC2O95563 127 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 PTTG1O95997 202 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 FGF7P21781 194 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 FGL1Q08830 312 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 OR1L4Q8NGR5 311 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 PFDN5Q99471 154 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 CELA1Q9UNI1 258 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 KLK5Q9Y337 293 aaPredicted RBP10.2□□□□□ -0.78
USP28-209ENST00000540925 PXMP4Q9Y6I8 212 aa10.2□□□□□ -0.78
USP28-209ENST00000540925 TRAV5A0A0B4J249 113 aa10.19□□□□□ -0.78
USP28-209ENST00000540925 SMIM9A6NGZ8 99 aa10.19□□□□□ -0.78
USP28-209ENST00000540925 DUSP14O95147 198 aaKnown RBP10.19□□□□□ -0.78
USP28-209ENST00000540925 OR8A1Q8NGG7 326 aa10.19□□□□□ -0.78
USP28-209ENST00000540925 SLC50A1Q9BRV3 221 aa10.19□□□□□ -0.78
USP28-209ENST00000540925 GCSAMLQ5JQS6 135 aa10.18□□□□□ -0.78
USP28-209ENST00000540925 ZNF738Q8NE65 137 aa10.18□□□□□ -0.78
USP28-209ENST00000540925 THAP6Q8TBB0 222 aa10.18□□□□□ -0.78
USP28-209ENST00000540925 IGF2BP2-AS1Q96M15 143 aa10.18□□□□□ -0.78
USP28-209ENST00000540925 WDR61Q9GZS3 305 aaKnown RBP10.18□□□□□ -0.78
USP28-209ENST00000540925 TMEM14CQ9P0S9 112 aa10.18□□□□□ -0.78
USP28-209ENST00000540925 ALG5Q9Y673 324 aa10.18□□□□□ -0.78
USP28-209ENST00000540925 FRAS1Q86XX4 4008 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 C11orf94C9JXX5 98 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 ZNF253O75346 499 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 AMBPP02760 352 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 SNRPCP09234 159 aaKnown RBP10.17□□□□□ -0.78
USP28-209ENST00000540925 GUK1Q16774 197 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 C12orf74Q32Q52 190 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 Q6ZTC4 211 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 RPUSD4Q96CM3 377 aaKnown RBP10.17□□□□□ -0.78
USP28-209ENST00000540925 ZNF586Q9NXT0 402 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 MBD2Q9UBB5 411 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 HSPB11Q9Y547 144 aa10.17□□□□□ -0.78
USP28-209ENST00000540925 PRAC2D3DTV9 90 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 H3BTX0 84 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 BOLA2-SMG1P6H3BVE0 249 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 M0R2Z0 102 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 PET100P0DJ07 73 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 CLINT1Q14677 625 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 SPINK13Q1W4C9 94 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 LRRC20Q8TCA0 184 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 FAM167A-AS1Q96KT0 104 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 ATP5SQ99766 215 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 GOLT1BQ9Y3E0 138 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 RFNGQ9Y644 331 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 DNAH2Q9P225 4427 aa10.16□□□□□ -0.78
USP28-209ENST00000540925 TRBV19A0A075B6N1 114 aa10.15□□□□□ -0.78
USP28-209ENST00000540925 TMEM189A5PLL7 270 aa10.15□□□□□ -0.78
USP28-209ENST00000540925 NDUFB4O95168 129 aa10.15□□□□□ -0.78
USP28-209ENST00000540925 HIST1H1AQ02539 215 aaPredicted RBP10.15□□□□□ -0.78
USP28-209ENST00000540925 C2CD4CQ8TF44 421 aa10.15□□□□□ -0.78
USP28-209ENST00000540925 SLC25A2Q9BXI2 301 aa10.15□□□□□ -0.78
USP28-209ENST00000540925 IGHV3OR16-12A0A075B7B8 117 aa10.14□□□□□ -0.79
USP28-209ENST00000540925 PRB4P10163 310 aaPredicted RBP10.14□□□□□ -0.79
USP28-209ENST00000540925 RPL12P30050 165 aaKnown RBP10.14□□□□□ -0.79
USP28-209ENST00000540925 TCTAP57738 103 aa10.14□□□□□ -0.79
USP28-209ENST00000540925 PDE6HQ13956 83 aa10.14□□□□□ -0.79
USP28-209ENST00000540925 BAP18Q8IXM2 172 aa10.14□□□□□ -0.79
USP28-209ENST00000540925 MRPL53Q96EL3 112 aaKnown RBP10.14□□□□□ -0.79
USP28-209ENST00000540925 PARD6GQ9BYG4 376 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms