RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SLC25A32Q9H2D1 315 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 NRN1Q9NPD7 142 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 IFNA5P01569 189 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 ZNF688P0C7X2 276 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 GALR1P47211 349 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 CMC4P56277 68 aaPredicted RBP13.23□□□□□ -0.29
CLN3-247ENST00000636351 INO80EQ8NBZ0 244 aaPredicted RBP13.23□□□□□ -0.29
CLN3-247ENST00000636351 SHANK2-AS3Q9BTD1 123 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 MAP6D1Q9H9H5 199 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 KCNIP2Q9NS61 270 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 SLC39A9Q9NUM3 307 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 PXMP4Q9Y6I8 212 aa13.23□□□□□ -0.29
CLN3-247ENST00000636351 K7EQG2 157 aa13.22□□□□□ -0.29
CLN3-247ENST00000636351 RPL29P47914 159 aaKnown RBP13.22□□□□□ -0.29
CLN3-247ENST00000636351 C10orf113Q5VZT2 155 aa13.22□□□□□ -0.29
CLN3-247ENST00000636351 APRG1Q8IVJ8 170 aa13.22□□□□□ -0.29
CLN3-247ENST00000636351 FAM24BQ8N5W8 94 aa13.22□□□□□ -0.29
CLN3-247ENST00000636351 OR1L4Q8NGR5 311 aa13.22□□□□□ -0.29
CLN3-247ENST00000636351 SCGB1C1Q8TD33 95 aa13.22□□□□□ -0.29
CLN3-247ENST00000636351 CHAC2Q8WUX2 184 aa13.22□□□□□ -0.29
CLN3-247ENST00000636351 WDR61Q9GZS3 305 aaKnown RBP13.22□□□□□ -0.29
CLN3-247ENST00000636351 ELOA3CA0A087WX78 387 aaPredicted RBP13.21□□□□□ -0.29
CLN3-247ENST00000636351 C17orf112F2Z3M2 114 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 DEFB131AP59861 70 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 PRR20EP86478 221 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 PRR20CP86479 221 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 PRR20DP86480 221 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 PRR20BP86481 221 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 PRR20AP86496 221 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 LINC00305Q7Z4B0 112 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 DCANP1Q8TF63 244 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 GPR82Q96P67 336 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 AQP10Q96PS8 301 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 PFDN5Q99471 154 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 FAM110AQ9BQ89 295 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 RNF24Q9Y225 148 aa13.21□□□□□ -0.29
CLN3-247ENST00000636351 SMLR1H3BR10 107 aa13.2□□□□□ -0.3
CLN3-247ENST00000636351 ATF4P18848 351 aaPredicted RBP13.2□□□□□ -0.3
CLN3-247ENST00000636351 SNRPD3P62318 126 aaKnown RBP13.2□□□□□ -0.3
CLN3-247ENST00000636351 ZNF124Q15973 351 aa13.2□□□□□ -0.3
CLN3-247ENST00000636351 PATE2Q6UY27 113 aa13.2□□□□□ -0.3
CLN3-247ENST00000636351 DNAJC4Q9NNZ3 241 aa13.2□□□□□ -0.3
CLN3-247ENST00000636351 RBMY1BA6NDE4 496 aaKnown RBP13.19□□□□□ -0.3
CLN3-247ENST00000636351 RBMY1EA6NEQ0 496 aaKnown RBP13.19□□□□□ -0.3
CLN3-247ENST00000636351 RBMY1DP0C7P1 496 aaKnown RBP13.19□□□□□ -0.3
CLN3-247ENST00000636351 RPL7P18124 248 aaKnown RBP13.19□□□□□ -0.3
CLN3-247ENST00000636351 PSMG4Q5JS54 123 aa13.19□□□□□ -0.3
CLN3-247ENST00000636351 RSG1Q9BU20 258 aa13.19□□□□□ -0.3
CLN3-247ENST00000636351 WFDC1Q9HC57 220 aa13.19□□□□□ -0.3
CLN3-247ENST00000636351 RETNQ9HD89 108 aa13.19□□□□□ -0.3
CLN3-247ENST00000636351 HYDINQ4G0P3 5121 aa13.18□□□□□ -0.3
CLN3-247ENST00000636351 hCG_2014768A0A024R1R8 64 aa13.18□□□□□ -0.3
CLN3-247ENST00000636351 LOC102724200A0A096LPH7 203 aaPredicted RBP13.18□□□□□ -0.3
CLN3-247ENST00000636351 ID1P41134 155 aa13.18□□□□□ -0.3
CLN3-247ENST00000636351 MEOX2P50222 304 aa13.18□□□□□ -0.3
CLN3-247ENST00000636351 TMEM37Q8WXS4 190 aa13.18□□□□□ -0.3
CLN3-247ENST00000636351 TNFSF18Q9UNG2 199 aa13.18□□□□□ -0.3
CLN3-247ENST00000636351 RPL35AP18077 110 aaKnown RBP13.17□□□□□ -0.3
CLN3-247ENST00000636351 ZNF266Q14584 549 aa13.17□□□□□ -0.3
CLN3-247ENST00000636351 SAMD13Q5VXD3 122 aa13.17□□□□□ -0.3
CLN3-247ENST00000636351 Q6ZNX1 250 aa13.17□□□□□ -0.3
CLN3-247ENST00000636351 C16orf92Q96LL3 132 aa13.17□□□□□ -0.3
CLN3-247ENST00000636351 LINC00052Q96N35 136 aa13.17□□□□□ -0.3
CLN3-247ENST00000636351 RNF222A6NCQ9 220 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 G3V3Q6 166 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 ARPC5O15511 151 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 GCSAMLQ5JQS6 135 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 FFAR4Q5NUL3 377 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 MORN5Q5VZ52 161 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 GATAD1Q8WUU5 269 aa13.16□□□□□ -0.3
CLN3-247ENST00000636351 PARD6GQ9BYG4 376 aaPredicted RBP13.16□□□□□ -0.3
CLN3-247ENST00000636351 JTBO76095 146 aa13.15□□□□□ -0.3
CLN3-247ENST00000636351 PSMB3P49720 205 aa13.15□□□□□ -0.3
CLN3-247ENST00000636351 APOC4P55056 127 aa13.15□□□□□ -0.3
CLN3-247ENST00000636351 BPIFA4PQ86YQ2 179 aa13.15□□□□□ -0.3
CLN3-247ENST00000636351 STHQ8IWL8 128 aa13.15□□□□□ -0.3
CLN3-247ENST00000636351 SEPSECSQ9HD40 501 aaKnown RBP13.15□□□□□ -0.3
CLN3-247ENST00000636351 KNCNA6PVL3 124 aa13.14□□□□□ -0.31
CLN3-247ENST00000636351 ISLRO14498 428 aa13.14□□□□□ -0.31
CLN3-247ENST00000636351 ACTL10Q5JWF8 245 aa13.14□□□□□ -0.31
CLN3-247ENST00000636351 FAM78BQ5VT40 261 aa13.14□□□□□ -0.31
CLN3-247ENST00000636351 LINC00322Q6ZN03 302 aaPredicted RBP13.14□□□□□ -0.31
CLN3-247ENST00000636351 HSD17B11Q8NBQ5 300 aa13.14□□□□□ -0.31
CLN3-247ENST00000636351 LRRC20Q8TCA0 184 aa13.14□□□□□ -0.31
CLN3-247ENST00000636351 BORCS7-ASMTA0A0B4J1R7 106 aa13.13□□□□□ -0.31
CLN3-247ENST00000636351 TRAV5A0A0B4J249 113 aa13.13□□□□□ -0.31
CLN3-247ENST00000636351 SOCS3O14543 225 aa13.13□□□□□ -0.31
CLN3-247ENST00000636351 MFFQ9GZY8 342 aa13.13□□□□□ -0.31
CLN3-247ENST00000636351 PLECQ15149 4684 aaKnown RBP13.13□□□□□ -0.31
CLN3-247ENST00000636351 A0A087X0K7 114 aa13.12□□□□□ -0.31
CLN3-247ENST00000636351 SNRPCP09234 159 aaKnown RBP13.12□□□□□ -0.31
CLN3-247ENST00000636351 IL17DQ8TAD2 202 aa13.12□□□□□ -0.31
CLN3-247ENST00000636351 ACOT6Q3I5F7 207 aaPredicted RBP13.11□□□□□ -0.31
CLN3-247ENST00000636351 SPATA31B1PQ5VZV4 182 aa13.11□□□□□ -0.31
CLN3-247ENST00000636351 MIR17HGQ75NE6 70 aa13.11□□□□□ -0.31
CLN3-247ENST00000636351 MRPL32Q9BYC8 188 aaKnown RBP13.11□□□□□ -0.31
CLN3-247ENST00000636351 TIMM9Q9Y5J7 89 aa13.11□□□□□ -0.31
CLN3-247ENST00000636351 RFNGQ9Y644 331 aa13.11□□□□□ -0.31
CLN3-247ENST00000636351 KIR2DL5BA0A0G2JN68 375 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms