RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 PRR20CP86479 221 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 PRR20DP86480 221 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 PRR20BP86481 221 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 PRR20AP86496 221 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 EWSR1Q01844 656 aaKnown RBP eCLIP12.34□□□□□ -0.43
CD9-209ENST00000540891 NHLH2Q02577 135 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 GDF5OSQ5U4N7 250 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 ZFAND6Q6FIF0 208 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 TMEM37Q8WXS4 190 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 C20orf173Q96LM9 149 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 LINC00052Q96N35 136 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 GPR82Q96P67 336 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 RSG1Q9BU20 258 aa12.34□□□□□ -0.43
CD9-209ENST00000540891 A0A0J9YWU9 116 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 H3BMM0 161 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 ISLRO14498 428 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 MRPS12O15235 138 aaKnown RBP12.33□□□□□ -0.44
CD9-209ENST00000540891 SPP1P10451 314 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 S100A7P31151 101 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 ID1P41134 155 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 ATP6V1FQ16864 119 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 PXDC1Q5TGL8 231 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 MIC13Q5XKP0 118 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 GATAD1Q8WUU5 269 aa12.33□□□□□ -0.44
CD9-209ENST00000540891 MPC2O95563 127 aa12.32□□□□□ -0.44
CD9-209ENST00000540891 HLA-DRB4P13762 266 aa12.32□□□□□ -0.44
CD9-209ENST00000540891 CXCL3P19876 107 aa12.32□□□□□ -0.44
CD9-209ENST00000540891 MEOX2P50222 304 aa12.32□□□□□ -0.44
CD9-209ENST00000540891 MORN5Q5VZ52 161 aa12.32□□□□□ -0.44
CD9-209ENST00000540891 MORN3Q6PF18 240 aaPredicted RBP12.32□□□□□ -0.44
CD9-209ENST00000540891 CHAC2Q8WUX2 184 aa12.32□□□□□ -0.44
CD9-209ENST00000540891 SAV1Q9H4B6 383 aaPredicted RBP12.32□□□□□ -0.44
CD9-209ENST00000540891 HLA-DRB4X5D2U9 266 aa12.32□□□□□ -0.44
CD9-209ENST00000540891 TRAV8-2A0A0B4J237 113 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 RPL7P18124 248 aaKnown RBP12.31□□□□□ -0.44
CD9-209ENST00000540891 BAXQ07812 192 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 RAB31Q13636 194 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 OPCMLQ14982 345 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 SAMD13Q5VXD3 122 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 LINC00305Q7Z4B0 112 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 OR5C1Q8NGR4 320 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 C16orf92Q96LL3 132 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 SLC25A31Q9H0C2 315 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 CSMD3Q7Z407 3707 aa12.31□□□□□ -0.44
CD9-209ENST00000540891 F6UB75 175 aa12.3□□□□□ -0.44
CD9-209ENST00000540891 FGF7P21781 194 aa12.3□□□□□ -0.44
CD9-209ENST00000540891 RPL29P47914 159 aaKnown RBP12.3□□□□□ -0.44
CD9-209ENST00000540891 IGFL4Q6B9Z1 124 aa12.3□□□□□ -0.44
CD9-209ENST00000540891 FOXI2Q6ZQN5 318 aa12.3□□□□□ -0.44
CD9-209ENST00000540891 CSNK1G2-AS1Q8NCQ2 148 aa12.3□□□□□ -0.44
CD9-209ENST00000540891 OR11H2Q8NH07 326 aa12.3□□□□□ -0.44
CD9-209ENST00000540891 RARRES2Q99969 163 aa12.3□□□□□ -0.44
CD9-209ENST00000540891 ELOA3CA0A087WX78 387 aaPredicted RBP12.29□□□□□ -0.44
CD9-209ENST00000540891 A0A087X0K7 114 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 COX7A2P2O60397 106 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 B2MP61769 119 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 CLINT1Q14677 625 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 TMEM41BQ5BJD5 291 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 C10orf113Q5VZT2 155 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 Q6ZRG5 221 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 S100A7AQ86SG5 101 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 OR11H7Q8NGC8 314 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 IL17DQ8TAD2 202 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 SLC39A9Q9NUM3 307 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 CLEC5AQ9NY25 188 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 MBD2Q9UBB5 411 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 RYR3Q15413 4870 aa12.29□□□□□ -0.44
CD9-209ENST00000540891 A0A0J9YX75 114 aa12.28□□□□□ -0.44
CD9-209ENST00000540891 ATF4P18848 351 aaPredicted RBP12.28□□□□□ -0.44
CD9-209ENST00000540891 FGL1Q08830 312 aa12.28□□□□□ -0.44
CD9-209ENST00000540891 FCN2Q15485 313 aa12.28□□□□□ -0.44
CD9-209ENST00000540891 THAP6Q8TBB0 222 aa12.28□□□□□ -0.44
CD9-209ENST00000540891 NPCDR1Q9BY65 106 aa12.28□□□□□ -0.44
CD9-209ENST00000540891 DNAJC4Q9NNZ3 241 aa12.28□□□□□ -0.44
CD9-209ENST00000540891 PXMP4Q9Y6I8 212 aa12.28□□□□□ -0.44
CD9-209ENST00000540891 DYNC2H1Q8NCM8 4307 aaKnown RBP12.28□□□□□ -0.44
CD9-209ENST00000540891 MPDU1O75352 247 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 IGKV3-20P01619 116 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 PET100P0DJ07 73 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 HLA-DMBP28068 263 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 RNF182Q8N6D2 247 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 CLUHP3Q96NS8 147 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 RPRMQ9NS64 109 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 RNF24Q9Y225 148 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 HSPB11Q9Y547 144 aa12.27□□□□□ -0.45
CD9-209ENST00000540891 TRAV5A0A0B4J249 113 aa12.26□□□□□ -0.45
CD9-209ENST00000540891 A8MTW9 85 aa12.26□□□□□ -0.45
CD9-209ENST00000540891 ZNF705EA8MWA4 302 aaPredicted RBP12.26□□□□□ -0.45
CD9-209ENST00000540891 SNRPCP09234 159 aaKnown RBP12.26□□□□□ -0.45
CD9-209ENST00000540891 FAM78BQ5VT40 261 aa12.26□□□□□ -0.45
CD9-209ENST00000540891 ZNF709Q8N972 641 aa12.26□□□□□ -0.45
CD9-209ENST00000540891 OR1L4Q8NGR5 311 aa12.26□□□□□ -0.45
CD9-209ENST00000540891 WDR61Q9GZS3 305 aaKnown RBP12.26□□□□□ -0.45
CD9-209ENST00000540891 XCL2Q9UBD3 114 aa12.26□□□□□ -0.45
CD9-209ENST00000540891 X6R8D5 127 aa12.26□□□□□ -0.45
CD9-209ENST00000540891 SACSQ9NZJ4 4579 aa12.25□□□□□ -0.45
CD9-209ENST00000540891 IGLC2P0DOY2 106 aa12.25□□□□□ -0.45
CD9-209ENST00000540891 RPL12P30050 165 aaKnown RBP12.25□□□□□ -0.45
CD9-209ENST00000540891 FXYD7P58549 80 aa12.25□□□□□ -0.45
CD9-209ENST00000540891 NUTF2P61970 127 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms