RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.4□□□□□ -0.58
HMGA1-206ENST00000478214 PPP1R1CQ8WVI7 109 aa11.4□□□□□ -0.58
HMGA1-206ENST00000478214 GPR82Q96P67 336 aa11.4□□□□□ -0.58
HMGA1-206ENST00000478214 ARV1Q9H2C2 271 aa11.4□□□□□ -0.58
HMGA1-206ENST00000478214 ALG5Q9Y673 324 aa11.4□□□□□ -0.58
HMGA1-206ENST00000478214 DYNC2H1Q8NCM8 4307 aaKnown RBP11.39□□□□□ -0.59
HMGA1-206ENST00000478214 UBE2L5PA0A1B0GUS4 154 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 H3BMM0 161 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 ISLRO14498 428 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 C4BPBP20851 252 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 MEOX2P50222 304 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 EWSR1Q01844 656 aaKnown RBP eCLIP11.39□□□□□ -0.59
HMGA1-206ENST00000478214 RAB31Q13636 194 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 ATP6V1FQ16864 119 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 PXDC1Q5TGL8 231 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 GDF5OSQ5U4N7 250 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 MIC13Q5XKP0 118 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 GATAD1Q8WUU5 269 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 C16orf92Q96LL3 132 aa11.39□□□□□ -0.59
HMGA1-206ENST00000478214 SPP1P10451 314 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 HLA-DRB4P13762 266 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 RPL7P18124 248 aaKnown RBP11.38□□□□□ -0.59
HMGA1-206ENST00000478214 BAXQ07812 192 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 SAMD13Q5VXD3 122 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 MORN3Q6PF18 240 aaPredicted RBP11.38□□□□□ -0.59
HMGA1-206ENST00000478214 S100A7AQ86SG5 101 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 OR11H2Q8NH07 326 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 TMEM37Q8WXS4 190 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 C20orf173Q96LM9 149 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 RARRES2Q99969 163 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 RNF126Q9BV68 326 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 SLC25A31Q9H0C2 315 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 HLA-DRB4X5D2U9 266 aa11.38□□□□□ -0.59
HMGA1-206ENST00000478214 COX7A2P2O60397 106 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 MPC2O95563 127 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 ATF4P18848 351 aaPredicted RBP11.37□□□□□ -0.59
HMGA1-206ENST00000478214 FGF7P21781 194 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 PRR20EP86478 221 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 PRR20CP86479 221 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 PRR20DP86480 221 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 PRR20BP86481 221 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 PRR20AP86496 221 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 FGL1Q08830 312 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 FOXI2Q6ZQN5 318 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 LINC00305Q7Z4B0 112 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 OR5C1Q8NGR4 320 aa11.37□□□□□ -0.59
HMGA1-206ENST00000478214 SAV1Q9H4B6 383 aaPredicted RBP11.37□□□□□ -0.59
HMGA1-206ENST00000478214 F6UB75 175 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 IGKV3-20P01619 116 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 CXCL3P19876 107 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 RPL29P47914 159 aaKnown RBP11.36□□□□□ -0.59
HMGA1-206ENST00000478214 CLINT1Q14677 625 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 OPCMLQ14982 345 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 C10orf113Q5VZT2 155 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 IGFL4Q6B9Z1 124 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 IL17DQ8TAD2 202 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 CLEC5AQ9NY25 188 aa11.36□□□□□ -0.59
HMGA1-206ENST00000478214 ELOA3CA0A087WX78 387 aaPredicted RBP11.35□□□□□ -0.59
HMGA1-206ENST00000478214 TRAV8-2A0A0B4J237 113 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 MRPS12O15235 138 aaKnown RBP11.35□□□□□ -0.59
HMGA1-206ENST00000478214 B2MP61769 119 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 TMEM41BQ5BJD5 291 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 MORN5Q5VZ52 161 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 Q6ZRG5 221 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 CHAC2Q8WUX2 184 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 DNAJC4Q9NNZ3 241 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 RPRMQ9NS64 109 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 SLC39A9Q9NUM3 307 aa11.35□□□□□ -0.59
HMGA1-206ENST00000478214 A0A087X0K7 114 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 A0A0J9YX75 114 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 SNRPCP09234 159 aaKnown RBP11.34□□□□□ -0.59
HMGA1-206ENST00000478214 PET100P0DJ07 73 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 NUTF2P61970 127 aaKnown RBP11.34□□□□□ -0.59
HMGA1-206ENST00000478214 EBLN2Q6P2I7 272 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 RNF182Q8N6D2 247 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 CSNK1G2-AS1Q8NCQ2 148 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 OR4B1Q8NGF8 309 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 THAP6Q8TBB0 222 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 MBD2Q9UBB5 411 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 XCL2Q9UBD3 114 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 RNF24Q9Y225 148 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 PXMP4Q9Y6I8 212 aa11.34□□□□□ -0.59
HMGA1-206ENST00000478214 MPDU1O75352 247 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 FXYD7P58549 80 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 FCN2Q15485 313 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 FAM78BQ5VT40 261 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 SPATA31B1PQ5VZV4 182 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 BPIFA4PQ86YQ2 179 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 OR1L4Q8NGR5 311 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 NPCDR1Q9BY65 106 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 MED28Q9H204 178 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 LYSTQ99698 3801 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 TENM2Q9NT68 2774 aa11.33□□□□□ -0.6
HMGA1-206ENST00000478214 TRAV5A0A0B4J249 113 aa11.32□□□□□ -0.6
HMGA1-206ENST00000478214 DEFB4AO15263 64 aa11.32□□□□□ -0.6
HMGA1-206ENST00000478214 HLA-DMBP28068 263 aa11.32□□□□□ -0.6
HMGA1-206ENST00000478214 RPL12P30050 165 aaKnown RBP11.32□□□□□ -0.6
HMGA1-206ENST00000478214 OR11H7Q8NGC8 314 aa11.32□□□□□ -0.6
HMGA1-206ENST00000478214 LRRC20Q8TCA0 184 aa11.32□□□□□ -0.6
HMGA1-206ENST00000478214 PFDN5Q99471 154 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 151.9 ms