RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SHANK2-AS3Q9BTD1 123 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 NPCDR1Q9BY65 106 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 SLC25A39Q9BZJ4 359 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-205ENST00000465238 WDR61Q9GZS3 305 aaKnown RBP13.15□□□□□ -0.3
COL7A1-205ENST00000465238 WFDC10AQ9H1F0 79 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 ARV1Q9H2C2 271 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 RNF24Q9Y225 148 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 ELOA3CA0A087WX78 387 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-205ENST00000465238 FXYD6-FXYD2A0A087WZ82 144 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 H3BRN7 92 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 B2MP61769 119 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 PRR20EP86478 221 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 PRR20CP86479 221 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 PRR20DP86480 221 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 PRR20BP86481 221 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 PRR20AP86496 221 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 ODF3L2Q3SX64 289 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 C10orf113Q5VZT2 155 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 PATE2Q6UY27 113 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 Q6ZNX1 250 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 OR1L4Q8NGR5 311 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 GPR82Q96P67 336 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 AQP10Q96PS8 301 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 UHRF2Q96PU4 802 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 DNAJC4Q9NNZ3 241 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 NRN1Q9NPD7 142 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 SLC39A9Q9NUM3 307 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 PXMP4Q9Y6I8 212 aa13.14□□□□□ -0.31
COL7A1-205ENST00000465238 C17orf112F2Z3M2 114 aa13.13□□□□□ -0.31
COL7A1-205ENST00000465238 K7EQG2 157 aa13.13□□□□□ -0.31
COL7A1-205ENST00000465238 GALR1P47211 349 aa13.13□□□□□ -0.31
COL7A1-205ENST00000465238 LEMD1Q68G75 181 aa13.13□□□□□ -0.31
COL7A1-205ENST00000465238 SCRT1Q9BWW7 348 aa13.13□□□□□ -0.31
COL7A1-205ENST00000465238 SLC25A32Q9H2D1 315 aa13.13□□□□□ -0.31
COL7A1-205ENST00000465238 KCNIP2Q9NS61 270 aa13.13□□□□□ -0.31
COL7A1-205ENST00000465238 JTBO76095 146 aa13.12□□□□□ -0.31
COL7A1-205ENST00000465238 LINC00305Q7Z4B0 112 aa13.12□□□□□ -0.31
COL7A1-205ENST00000465238 DCANP1Q8TF63 244 aa13.12□□□□□ -0.31
COL7A1-205ENST00000465238 PFDN5Q99471 154 aa13.12□□□□□ -0.31
COL7A1-205ENST00000465238 MAP6D1Q9H9H5 199 aa13.12□□□□□ -0.31
COL7A1-205ENST00000465238 WFDC1Q9HC57 220 aa13.12□□□□□ -0.31
COL7A1-205ENST00000465238 RPL7P18124 248 aaKnown RBP13.11□□□□□ -0.31
COL7A1-205ENST00000465238 APRG1Q8IVJ8 170 aa13.11□□□□□ -0.31
COL7A1-205ENST00000465238 TMEM37Q8WXS4 190 aa13.11□□□□□ -0.31
COL7A1-205ENST00000465238 RSG1Q9BU20 258 aa13.11□□□□□ -0.31
COL7A1-205ENST00000465238 TNFSF18Q9UNG2 199 aa13.11□□□□□ -0.31
COL7A1-205ENST00000465238 EPPK1P58107 5090 aaKnown RBP13.11□□□□□ -0.31
COL7A1-205ENST00000465238 ZNF688P0C7X2 276 aa13.1□□□□□ -0.31
COL7A1-205ENST00000465238 DEFB131AP59861 70 aa13.1□□□□□ -0.31
COL7A1-205ENST00000465238 SNRPD3P62318 126 aaKnown RBP13.1□□□□□ -0.31
COL7A1-205ENST00000465238 FAM24BQ8N5W8 94 aa13.1□□□□□ -0.31
COL7A1-205ENST00000465238 PARD6GQ9BYG4 376 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-205ENST00000465238 G3V3Q6 166 aa13.09□□□□□ -0.31
COL7A1-205ENST00000465238 SMLR1H3BR10 107 aa13.09□□□□□ -0.31
COL7A1-205ENST00000465238 ATF4P18848 351 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-205ENST00000465238 ID1P41134 155 aa13.09□□□□□ -0.31
COL7A1-205ENST00000465238 MEOX2P50222 304 aa13.09□□□□□ -0.31
COL7A1-205ENST00000465238 ZNF266Q14584 549 aa13.09□□□□□ -0.31
COL7A1-205ENST00000465238 SAMD13Q5VXD3 122 aa13.09□□□□□ -0.31
COL7A1-205ENST00000465238 GATAD1Q8WUU5 269 aa13.09□□□□□ -0.31
COL7A1-205ENST00000465238 SEPSECSQ9HD40 501 aaKnown RBP13.09□□□□□ -0.31
COL7A1-205ENST00000465238 PLECQ15149 4684 aaKnown RBP13.08□□□□□ -0.32
COL7A1-205ENST00000465238 LOC102724200A0A096LPH7 203 aaPredicted RBP13.08□□□□□ -0.32
COL7A1-205ENST00000465238 PSMG4Q5JS54 123 aa13.08□□□□□ -0.32
COL7A1-205ENST00000465238 RNF222A6NCQ9 220 aa13.07□□□□□ -0.32
COL7A1-205ENST00000465238 ARPC5O15511 151 aa13.07□□□□□ -0.32
COL7A1-205ENST00000465238 ZNF124Q15973 351 aa13.07□□□□□ -0.32
COL7A1-205ENST00000465238 BPIFA4PQ86YQ2 179 aa13.07□□□□□ -0.32
COL7A1-205ENST00000465238 C16orf92Q96LL3 132 aa13.07□□□□□ -0.32
COL7A1-205ENST00000465238 hCG_2014768A0A024R1R8 64 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 ISLRO14498 428 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 PSMB3P49720 205 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 GCSAMLQ5JQS6 135 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 FFAR4Q5NUL3 377 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 LINC00052Q96N35 136 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 MFFQ9GZY8 342 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 HYDINQ4G0P3 5121 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 BIRC6Q9NR09 4857 aa13.06□□□□□ -0.32
COL7A1-205ENST00000465238 BORCS7-ASMTA0A0B4J1R7 106 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 TRAV5A0A0B4J249 113 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 RPL35AP18077 110 aaKnown RBP13.05□□□□□ -0.32
COL7A1-205ENST00000465238 FAM78BQ5VT40 261 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 MORN5Q5VZ52 161 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 HSD17B11Q8NBQ5 300 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 LRRC20Q8TCA0 184 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 OVOL2Q9BRP0 275 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 TIMM9Q9Y5J7 89 aa13.05□□□□□ -0.32
COL7A1-205ENST00000465238 SOCS3O14543 225 aa13.04□□□□□ -0.32
COL7A1-205ENST00000465238 APOC4P55056 127 aa13.04□□□□□ -0.32
COL7A1-205ENST00000465238 ALMS1Q8TCU4 4167 aa13.03□□□□□ -0.32
COL7A1-205ENST00000465238 A0A087X0K7 114 aa13.03□□□□□ -0.32
COL7A1-205ENST00000465238 HMSDA8MTL9 139 aa13.03□□□□□ -0.32
COL7A1-205ENST00000465238 TAAR5O14804 337 aa13.03□□□□□ -0.32
COL7A1-205ENST00000465238 MRPS12O15235 138 aaKnown RBP13.03□□□□□ -0.32
COL7A1-205ENST00000465238 STHQ8IWL8 128 aa13.03□□□□□ -0.32
COL7A1-205ENST00000465238 ST6GAL2Q96JF0 529 aa13.03□□□□□ -0.32
COL7A1-205ENST00000465238 C17orf77Q96MU5 243 aa13.03□□□□□ -0.32
COL7A1-205ENST00000465238 MRPL32Q9BYC8 188 aaKnown RBP13.03□□□□□ -0.32
COL7A1-205ENST00000465238 AGRNO00468 2067 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms