RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ZNF785A8K8V0 405 aa14.38□□□□□ -0.11
SQSTM1-216ENST00000626660 HYPMO75409 117 aa14.38□□□□□ -0.11
SQSTM1-216ENST00000626660 RPL11P62913 178 aaKnown RBP14.38□□□□□ -0.11
SQSTM1-216ENST00000626660 ZNF709Q8N972 641 aa14.38□□□□□ -0.11
SQSTM1-216ENST00000626660 SPAG8Q99932 426 aaPredicted RBP14.38□□□□□ -0.11
SQSTM1-216ENST00000626660 GGTLC1Q9BX51 225 aa14.38□□□□□ -0.11
SQSTM1-216ENST00000626660 DOK5Q9P104 306 aa14.38□□□□□ -0.11
SQSTM1-216ENST00000626660 TGP01266 2768 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 HELTA6NFD8 242 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 OR5G3P0C626 314 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 PLP1P60201 277 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 PAFAH1B2P68402 229 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 C16orf54Q6UWD8 224 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 ARL6Q9H0F7 186 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 KCNIP2Q9NS61 270 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 TNFSF18Q9UNG2 199 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 HIGD1AQ9Y241 93 aa14.37□□□□□ -0.11
SQSTM1-216ENST00000626660 IGKV3-7A0A075B6H7 116 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 OR4C46A6NHA9 309 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 SMLR1H3BR10 107 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 BUB3O43684 328 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 RPL29P47914 159 aaKnown RBP14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 OPCMLQ14982 345 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 MIC13Q5XKP0 118 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 FAM90A2PQ658T7 463 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 Q6ZRG5 221 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 STPG3Q8N7X2 389 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 SCGB1C1Q8TD33 95 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 NPCDR1Q9BY65 106 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 WDR61Q9GZS3 305 aaKnown RBP14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 FBXL17Q9UF56 701 aa14.36□□□□□ -0.11
SQSTM1-216ENST00000626660 C17orf112F2Z3M2 114 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 G3V3Q6 166 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 COX7A2P2O60397 106 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 AP2S1P53680 142 aaPredicted RBP14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 CD81P60033 236 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 B2MP61769 119 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 C1orf194Q5T5A4 169 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 MRAPQ8TCY5 172 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 GLMPQ8WWB7 406 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 RNF24Q9Y225 148 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 PXMP4Q9Y6I8 212 aa14.35□□□□□ -0.11
SQSTM1-216ENST00000626660 K7EIL1 84 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 DNASE2O00115 360 aaPredicted RBP14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 ARPC5O15511 151 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 PRR20EP86478 221 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 PRR20CP86479 221 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 PRR20DP86480 221 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 PRR20BP86481 221 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 PRR20AP86496 221 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 SIGLEC15Q6ZMC9 328 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 OR8I2Q8N0Y5 310 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 GBGT1Q8N5D6 347 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 OR1L4Q8NGR5 311 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 SLC39A9Q9NUM3 307 aa14.34□□□□□ -0.11
SQSTM1-216ENST00000626660 ELOA3CA0A087WX78 387 aaPredicted RBP14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 RNF222A6NCQ9 220 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 ZNF98A6NK75 572 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 TFPI2P48307 235 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 ZNF266Q14584 549 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 STXBP6Q8NFX7 210 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 PFDN5Q99471 154 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 NEURL2Q9BR09 285 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 PARD6GQ9BYG4 376 aaPredicted RBP14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 SLC25A39Q9BZJ4 359 aaPredicted RBP14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 ARV1Q9H2C2 271 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 SLC25A22Q9H936 323 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 WFDC1Q9HC57 220 aa14.33□□□□□ -0.12
SQSTM1-216ENST00000626660 DNAH3Q8TD57 4116 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 TRAV2A0A0B4J234 112 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 H3BRN7 92 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 DEFB121Q5J5C9 76 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 C10orf113Q5VZT2 155 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 AKAP14Q86UN6 197 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 ST6GAL2Q96JF0 529 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 GPR82Q96P67 336 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 SHANK2-AS3Q9BTD1 123 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 MFFQ9GZY8 342 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 MS4A6AQ9H2W1 248 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 DNAJC4Q9NNZ3 241 aa14.32□□□□□ -0.12
SQSTM1-216ENST00000626660 CD7P09564 240 aa14.31□□□□□ -0.12
SQSTM1-216ENST00000626660 GALR1P47211 349 aa14.31□□□□□ -0.12
SQSTM1-216ENST00000626660 PATE2Q6UY27 113 aa14.31□□□□□ -0.12
SQSTM1-216ENST00000626660 WFDC3Q8IUB2 231 aa14.31□□□□□ -0.12
SQSTM1-216ENST00000626660 UHRF2Q96PU4 802 aa14.31□□□□□ -0.12
SQSTM1-216ENST00000626660 SCRT1Q9BWW7 348 aa14.31□□□□□ -0.12
SQSTM1-216ENST00000626660 SMAD5-AS1Q9Y6J3 95 aa14.31□□□□□ -0.12
SQSTM1-216ENST00000626660 BORCS7-ASMTA0A0B4J1R7 106 aa14.3□□□□□ -0.12
SQSTM1-216ENST00000626660 HMSDA8MTL9 139 aa14.3□□□□□ -0.12
SQSTM1-216ENST00000626660 CMC4P56277 68 aaPredicted RBP14.3□□□□□ -0.12
SQSTM1-216ENST00000626660 LINC00305Q7Z4B0 112 aa14.3□□□□□ -0.12
SQSTM1-216ENST00000626660 TCTE3Q8IZS6 198 aa14.3□□□□□ -0.12
SQSTM1-216ENST00000626660 Q8N1Y9 231 aa14.3□□□□□ -0.12
SQSTM1-216ENST00000626660 RSG1Q9BU20 258 aa14.3□□□□□ -0.12
SQSTM1-216ENST00000626660 RPL7P18124 248 aaKnown RBP14.29□□□□□ -0.12
SQSTM1-216ENST00000626660 LEMD1Q68G75 181 aa14.29□□□□□ -0.12
SQSTM1-216ENST00000626660 GATAD1Q8WUU5 269 aa14.29□□□□□ -0.12
SQSTM1-216ENST00000626660 SLC25A32Q9H2D1 315 aa14.29□□□□□ -0.12
SQSTM1-216ENST00000626660 NRN1Q9NPD7 142 aa14.29□□□□□ -0.12
SQSTM1-216ENST00000626660 TAAR5O14804 337 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms