RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SELENOTP62341 195 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 EWSR1Q01844 656 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL7A1-205ENST00000465238 NHLH2Q02577 135 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 RAB31Q13636 194 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 TCF24Q7RTU0 167 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 ASB13Q8WXK3 278 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 SPAG8Q99932 426 aaPredicted RBP13.25□□□□□ -0.29
COL7A1-205ENST00000465238 TMEM147Q9BVK8 224 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 MBD2Q9UBB5 411 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 U3KQE9 123 aa13.25□□□□□ -0.29
COL7A1-205ENST00000465238 DFFBO76075 338 aa13.24□□□□□ -0.29
COL7A1-205ENST00000465238 GIPP09681 153 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-205ENST00000465238 GATA2P23769 480 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-205ENST00000465238 NUP62P37198 522 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-205ENST00000465238 CD81P60033 236 aa13.24□□□□□ -0.29
COL7A1-205ENST00000465238 RPL11P62913 178 aaKnown RBP13.24□□□□□ -0.29
COL7A1-205ENST00000465238 PAFAH1B2P68402 229 aa13.24□□□□□ -0.29
COL7A1-205ENST00000465238 BAXQ07812 192 aa13.24□□□□□ -0.29
COL7A1-205ENST00000465238 FGL1Q08830 312 aa13.24□□□□□ -0.29
COL7A1-205ENST00000465238 PPP1R14BQ96C90 147 aa13.24□□□□□ -0.29
COL7A1-205ENST00000465238 IGKV3-7A0A075B6H7 116 aa13.23□□□□□ -0.29
COL7A1-205ENST00000465238 OR4C46A6NHA9 309 aa13.23□□□□□ -0.29
COL7A1-205ENST00000465238 RAP2BP61225 183 aa13.23□□□□□ -0.29
COL7A1-205ENST00000465238 FAM90A2PQ658T7 463 aa13.23□□□□□ -0.29
COL7A1-205ENST00000465238 TMEM182Q6ZP80 229 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-205ENST00000465238 OR5C1Q8NGR4 320 aa13.23□□□□□ -0.29
COL7A1-205ENST00000465238 NEURL2Q9BR09 285 aa13.23□□□□□ -0.29
COL7A1-205ENST00000465238 HELTA6NFD8 242 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 AGPAT2O15120 278 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 CD7P09564 240 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 ORM2P19652 201 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 RPL12P30050 165 aaKnown RBP13.22□□□□□ -0.29
COL7A1-205ENST00000465238 S100A7P31151 101 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 VWC2Q2TAL6 325 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 C16orf54Q6UWD8 224 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 LINC00322Q6ZN03 302 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-205ENST00000465238 ZNF546Q86UE3 836 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 OR1B1Q8NGR6 318 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 WDR83OSQ9Y284 106 aa13.22□□□□□ -0.29
COL7A1-205ENST00000465238 UBE2L5PA0A1B0GUS4 154 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 DNASE2O00115 360 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-205ENST00000465238 BUB3O43684 328 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 LINC00869P0C866 280 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 TFPI2P48307 235 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 CAMLGP49069 296 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 AP2S1P53680 142 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-205ENST00000465238 GBGT1Q8N5D6 347 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 MGST2Q99735 147 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 SLC45A2Q9UMX9 530 aa13.21□□□□□ -0.29
COL7A1-205ENST00000465238 HYPMO75409 117 aa13.2□□□□□ -0.3
COL7A1-205ENST00000465238 CLINT1Q14677 625 aa13.2□□□□□ -0.3
COL7A1-205ENST00000465238 WFDC3Q8IUB2 231 aa13.2□□□□□ -0.3
COL7A1-205ENST00000465238 DOK5Q9P104 306 aa13.2□□□□□ -0.3
COL7A1-205ENST00000465238 HSPB11Q9Y547 144 aa13.2□□□□□ -0.3
COL7A1-205ENST00000465238 DNAH1Q9P2D7 4330 aa13.2□□□□□ -0.3
COL7A1-205ENST00000465238 OR11H12B2RN74 326 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 OR5G3P0C626 314 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 FGF7P21781 194 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 C1orf194Q5T5A4 169 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 PXDC1Q5TGL8 231 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 S100A7AQ86SG5 101 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 STXBP6Q8NFX7 210 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 IL17DQ8TAD2 202 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 GLMPQ8WWB7 406 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 ARL6Q9H0F7 186 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 MS4A6AQ9H2W1 248 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 FBXL17Q9UF56 701 aa13.19□□□□□ -0.3
COL7A1-205ENST00000465238 MPDU1O75352 247 aa13.18□□□□□ -0.3
COL7A1-205ENST00000465238 CMC4P56277 68 aaPredicted RBP13.18□□□□□ -0.3
COL7A1-205ENST00000465238 PLP1P60201 277 aa13.18□□□□□ -0.3
COL7A1-205ENST00000465238 SIGLEC15Q6ZMC9 328 aa13.18□□□□□ -0.3
COL7A1-205ENST00000465238 OR8I2Q8N0Y5 310 aa13.18□□□□□ -0.3
COL7A1-205ENST00000465238 DEFB125Q8N687 156 aa13.18□□□□□ -0.3
COL7A1-205ENST00000465238 OR2T35Q8NGX2 323 aa13.18□□□□□ -0.3
COL7A1-205ENST00000465238 HIGD1AQ9Y241 93 aa13.18□□□□□ -0.3
COL7A1-205ENST00000465238 TRAV2A0A0B4J234 112 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 Q5BKY6 102 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 Q6ZRG5 221 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 STPG3Q8N7X2 389 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 ATP5SQ99766 215 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 GGTLC1Q9BX51 225 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 SMIM3Q9BZL3 60 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 SRD5A3Q9H8P0 318 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 RETNQ9HD89 108 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 UBQLN2Q9UHD9 624 aa13.17□□□□□ -0.3
COL7A1-205ENST00000465238 RBMY1BA6NDE4 496 aaKnown RBP13.16□□□□□ -0.3
COL7A1-205ENST00000465238 RBMY1EA6NEQ0 496 aaKnown RBP13.16□□□□□ -0.3
COL7A1-205ENST00000465238 ZNF98A6NK75 572 aa13.16□□□□□ -0.3
COL7A1-205ENST00000465238 IFNA5P01569 189 aa13.16□□□□□ -0.3
COL7A1-205ENST00000465238 RBMY1DP0C7P1 496 aaKnown RBP13.16□□□□□ -0.3
COL7A1-205ENST00000465238 RPL29P47914 159 aaKnown RBP13.16□□□□□ -0.3
COL7A1-205ENST00000465238 MIC13Q5XKP0 118 aa13.16□□□□□ -0.3
COL7A1-205ENST00000465238 CHAC2Q8WUX2 184 aa13.16□□□□□ -0.3
COL7A1-205ENST00000465238 SLC25A22Q9H936 323 aa13.16□□□□□ -0.3
COL7A1-205ENST00000465238 COX7A2P2O60397 106 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 OPCMLQ14982 345 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 ZNF709Q8N972 641 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 INO80EQ8NBZ0 244 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-205ENST00000465238 SCGB1C1Q8TD33 95 aa13.15□□□□□ -0.3
COL7A1-205ENST00000465238 FAM110AQ9BQ89 295 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms