RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CHAC1Q9BUX1 264 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 CSTL1Q9H114 145 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 ANAPC10Q9UM13 185 aa5.3□□□□□ -1.56
UPF2-201ENST00000356352 SPAG17Q6Q759 2223 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 H3BMM0 161 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 NMSQ5H8A3 153 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 C2orf82Q6UX34 121 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 MCRIP2Q9BUT9 160 aaKnown RBP5.29□□□□□ -1.56
UPF2-201ENST00000356352 INS-IGF2F8WCM5 200 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 EREGO14944 169 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 FOXF2Q12947 444 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 RBMY1FQ15415 496 aaKnown RBP5.29□□□□□ -1.56
UPF2-201ENST00000356352 TMEM14EPQ6UXP3 125 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 Q6ZS49 121 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 LHFPL1Q86WI0 220 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 CD177Q8N6Q3 437 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 PATJQ8NI35 1801 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 TMEM219Q86XT9 240 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 TMEM141Q96I45 108 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 ZNF236Q9UL36 1845 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 NDUFB8O95169 186 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 GNLYP22749 145 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 LCNL1Q6ZST4 164 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 C11orf44Q8N8P7 122 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 A0A0U1RRA0 63 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 E9PQ18 207 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 FCN3O75636 299 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 PRB3Q04118 309 aaPredicted RBP5.29□□□□□ -1.56
UPF2-201ENST00000356352 KLRD1Q13241 179 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 SPATA31B1PQ5VZV4 182 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 SFTA2Q6UW10 78 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 IL17RELQ6ZVW7 336 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 EXOC3-AS1Q8N2X6 119 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 PKIGQ9Y2B9 76 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 SIGLEC9Q9Y336 463 aa5.29□□□□□ -1.56
UPF2-201ENST00000356352 TRIP12Q14669 1992 aaPredicted RBP5.28□□□□□ -1.56
UPF2-201ENST00000356352 IGHV3-73A0A0B4J1V6 119 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 H0YIZ8 118 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 TNFRSF6BO95407 300 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 UNQ6494/PRO21346Q6UXR6 183 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 ZCCHC24Q8N2G6 241 aaKnown RBP5.28□□□□□ -1.56
UPF2-201ENST00000356352 C3orf56Q8N813 242 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 WFDC12Q8WWY7 111 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 RHPN1-AS1Q9BWJ2 59 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 VSIRQ9H7M9 311 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 CRIM1Q9NZV1 1036 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 RALGAPA2Q2PPJ7 1873 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 IGKV1-12A0A0C4DH73 117 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 A0A0G2JNJ9 132 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 TBX6O95947 436 aaPredicted RBP5.28□□□□□ -1.56
UPF2-201ENST00000356352 IGKV1D-12P01611 117 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 BCL6BQ8N143 479 aaPredicted RBP5.28□□□□□ -1.56
UPF2-201ENST00000356352 TMEM75Q8N9X5 138 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 MDS2Q8NDY4 140 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 C1orf159Q96HA4 380 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 HIST1H2BLQ99880 126 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 Q9UFV3 132 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 LINC00527Q9UJ94 153 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 LINC01619G3V211 115 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 NCR2O95944 276 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 IGHG3P01860 377 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 TFF1P04155 84 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 ZNF474Q6S9Z5 364 aaPredicted RBP5.28□□□□□ -1.56
UPF2-201ENST00000356352 FGFBP3Q8TAT2 258 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 NRXN2Q9P2S2 1712 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 ZNF561-AS1K7EIQ3 104 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 LINC01551Q86U37 167 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 PRIMA1Q86XR5 153 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 HIST3H2BBQ8N257 126 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 FAM110DQ8TAY7 271 aaPredicted RBP5.28□□□□□ -1.56
UPF2-201ENST00000356352 SHANK2-AS3Q9BTD1 123 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 WDR90Q96KV7 1748 aa5.28□□□□□ -1.56
UPF2-201ENST00000356352 APOC4P55056 127 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 ZNF329Q86UD4 541 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 NUP35Q8NFH5 326 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 ZNF319Q9P2F9 582 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 IGHV3-53P01767 116 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 PRTN3P24158 256 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 NPC2P61916 151 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 GUSBP1Q15486 140 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 Q86TA4 180 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 XIRP1Q702N8 1843 aaKnown RBP5.27□□□□□ -1.57
UPF2-201ENST00000356352 TRBV25-1A0A075B6N4 114 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 SRSF3P84103 164 aaKnown RBP5.27□□□□□ -1.57
UPF2-201ENST00000356352 TMEM249Q2WGJ8 235 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 C10orf55Q5SWW7 151 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 C17orf82Q86X59 251 aaPredicted RBP5.27□□□□□ -1.57
UPF2-201ENST00000356352 LIME1Q9H400 295 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 ZNF492Q9P255 531 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 MTCL1Q9Y4B5 1905 aaKnown RBP5.27□□□□□ -1.57
UPF2-201ENST00000356352 PSME4Q14997 1843 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 IGKV1D-8A0A087WSZ0 117 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 J3QLI3 93 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 INAFM2P0DMQ5 153 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 C1orf194Q5T5A4 169 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 TMEM158Q8WZ71 300 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 SNHG12Q9BXW3 62 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 EDA2RQ9HAV5 297 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 NEUROG3Q9Y4Z2 214 aa5.27□□□□□ -1.57
UPF2-201ENST00000356352 FAM231BA6NCW3 169 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms