RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 OR5B12Q96R08 314 aa7.25□□□□□ -1.25
TRIM28-208ENST00000597172 CITED2Q99967 270 aaPredicted RBP7.25□□□□□ -1.25
TRIM28-208ENST00000597172 ZNF471Q9BX82 626 aaPredicted RBP7.25□□□□□ -1.25
TRIM28-208ENST00000597172 PLA2G2EQ9NZK7 142 aa7.25□□□□□ -1.25
TRIM28-208ENST00000597172 SLC45A2Q9UMX9 530 aa7.25□□□□□ -1.25
TRIM28-208ENST00000597172 TCRBV4S1A1TA0A5B7 111 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 ADARB2-AS1A8MUL3 147 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 PPP5D1E7EU14 171 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 I3L521 148 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 AGPAT2O15120 278 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 JTBO76095 146 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 LINC00869P0C866 280 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 FGF7P21781 194 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 GATA2P23769 480 aaPredicted RBP7.24□□□□□ -1.25
TRIM28-208ENST00000597172 ATP6V0CP27449 155 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 GPR183P32249 361 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 RUNX1Q01196 453 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 ZNF266Q14584 549 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 SLC51BQ86UW2 128 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 SCGB1C1Q8TD33 95 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 ATP6V0BQ99437 205 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 TRGV9Q99603 122 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 GINS3Q9BRX5 216 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 NPCDR1Q9BY65 106 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 PEF1Q9UBV8 284 aaKnown RBP7.24□□□□□ -1.25
TRIM28-208ENST00000597172 STARD9Q9P2P6 4700 aa7.24□□□□□ -1.25
TRIM28-208ENST00000597172 PLECQ15149 4684 aaKnown RBP7.24□□□□□ -1.25
TRIM28-208ENST00000597172 TRAV30A0A087WSZ9 112 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 BORCS7-ASMTA0A0B4J1R7 106 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 ANKRD34BA5PLL1 514 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 ZFP92A6NM28 416 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 BMPR1BO00238 502 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 TGOLN2O43493 480 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 GNG7O60262 68 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 CFDP00746 253 aaPredicted RBP7.23□□□□□ -1.25
TRIM28-208ENST00000597172 LGALS1P09382 135 aaKnown RBP7.23□□□□□ -1.25
TRIM28-208ENST00000597172 CAMLGP49069 296 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 YPEL3P61236 119 aaPredicted RBP7.23□□□□□ -1.25
TRIM28-208ENST00000597172 MIC13Q5XKP0 118 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 CYP2G1PQ6ZSU1 146 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 BAP18Q8IXM2 172 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 HSD17B11Q8NBQ5 300 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 STOML3Q8TAV4 291 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 ST8SIA2Q92186 375 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 RSG1Q9BU20 258 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 GGTLC1Q9BX51 225 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 SH3BGRL3Q9H299 93 aa7.23□□□□□ -1.25
TRIM28-208ENST00000597172 MPDU1O75352 247 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 OR2C1O95371 312 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 HSPB1P04792 205 aaKnown RBP7.22□□□□□ -1.25
TRIM28-208ENST00000597172 SPP1P10451 314 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 PSG1P11464 419 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 C4BPBP20851 252 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 ARL3P36405 182 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 RPL29P47914 159 aaKnown RBP7.22□□□□□ -1.25
TRIM28-208ENST00000597172 PRR20EP86478 221 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 PRR20CP86479 221 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 PRR20DP86480 221 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 PRR20BP86481 221 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 PRR20AP86496 221 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 RAB31Q13636 194 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 SPSB3Q6PJ21 355 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 BPIFCQ8NFQ6 507 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 C4orf3Q8WVX3 66 aa7.22□□□□□ -1.25
TRIM28-208ENST00000597172 TSSC4Q9Y5U2 329 aaPredicted RBP7.22□□□□□ -1.25
TRIM28-208ENST00000597172 IGHV4OR15-8A0A075B7B6 117 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 A0A087WW49 117 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 IGHV3-35A0A0C4DH35 117 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 A0A1W2PRX2 142 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 NUPL2O15504 423 aaKnown RBP7.21□□□□□ -1.26
TRIM28-208ENST00000597172 GGCTO75223 188 aaKnown RBP7.21□□□□□ -1.26
TRIM28-208ENST00000597172 YIF1AO95070 293 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 TOMM40O96008 361 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 RD3LP0DJH9 198 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 TPT1P13693 172 aaKnown RBP7.21□□□□□ -1.26
TRIM28-208ENST00000597172 IFITM2Q01629 132 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 DEFB136Q30KP8 78 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 KHDC1LQ5JSQ8 128 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 PATE2Q6UY27 113 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 C8orf86Q6ZUL3 223 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 STPG3Q8N7X2 389 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 KLHL30-AS1Q8NEE0 82 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 PSMG3Q9BT73 122 aaPredicted RBP7.21□□□□□ -1.26
TRIM28-208ENST00000597172 SLC25A32Q9H2D1 315 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 VSIRQ9H7M9 311 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 TIMM9Q9Y5J7 89 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 PXMP4Q9Y6I8 212 aa7.21□□□□□ -1.26
TRIM28-208ENST00000597172 SEC11BP0C7V7 166 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 IGLL1P15814 213 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 KRTAP10-11P60412 298 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 B2MP61769 119 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 SELENOTP62341 195 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 EIF5AP63241 154 aaKnown RBP7.2□□□□□ -1.26
TRIM28-208ENST00000597172 ZNF616Q08AN1 781 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 GCSAMLQ5JQS6 135 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 FAM209BQ5JX69 171 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 TOMM20LQ6UXN7 152 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 ZNF600Q6ZNG1 722 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 GPHB5Q86YW7 130 aa7.2□□□□□ -1.26
TRIM28-208ENST00000597172 ZNF709Q8N972 641 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms