RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	OR5C1	Q8NGR4	320 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034		Q8WTZ3	238 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	UQCC1	Q9NVA1	299 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	WDR83OS	Q9Y284	106 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	NBEAL1	Q6ZS30	2694 aa		13.63	□□□□□ -0.23
COMMD4-222	ENST00000568034	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	IGLV1-51	P01701	117 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	EGFEM1P	Q0D2K5	195 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	OR2F1	Q13607	317 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	ATP6V1F	Q16864	119 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	CYP2G1P	Q6ZSU1	146 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	MARC2	Q969Z3	335 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	ST6GAL2	Q96JF0	529 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	MGST2	Q99735	147 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	GPR61	Q9BZJ8	451 aa		13.62	□□□□□ -0.23
COMMD4-222	ENST00000568034	UBE2L5P	A0A1B0GUS4	154 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	RNF222	A6NCQ9	220 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	IL4	P05112	153 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	GATA2	P23769	480 aa	Predicted RBP	13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	CLINT1	Q14677	625 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	TEPP	Q6URK8	271 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	OR51G1	Q8NGK1	321 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	AQP10	Q96PS8	301 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	GINS3	Q9BRX5	216 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	MRPL27	Q9P0M9	148 aa	Known RBP	13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	MLX	Q9UH92	298 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	TNFSF18	Q9UNG2	199 aa		13.61	□□□□□ -0.23
COMMD4-222	ENST00000568034	FXYD6-FXYD2	A0A087WZ82	144 aa		13.6	□□□□□ -0.23
COMMD4-222	ENST00000568034	IGHV7-4-1	A0A0J9YVY3	117 aa		13.6	□□□□□ -0.23
COMMD4-222	ENST00000568034	APOH	P02749	345 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-222	ENST00000568034	KRTAP10-11	P60412	298 aa		13.6	□□□□□ -0.23
COMMD4-222	ENST00000568034	RNF125	Q96EQ8	232 aa		13.6	□□□□□ -0.23
COMMD4-222	ENST00000568034	WFDC1	Q9HC57	220 aa		13.6	□□□□□ -0.23
COMMD4-222	ENST00000568034	SMPX	Q9UHP9	88 aa		13.6	□□□□□ -0.23
COMMD4-222	ENST00000568034	IGHV3-49	A0A0A0MS15	119 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	AGPAT2	O15120	278 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	FABP1	P07148	127 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	CRYBB3	P26998	211 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	DEFB114	Q30KQ6	69 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	BTNL8	Q6UX41	500 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	STPG3	Q8N7X2	389 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	OR11H4	Q8NGC9	324 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	SMIM3	Q9BZL3	60 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	SLC45A2	Q9UMX9	530 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	SELENOK	Q9Y6D0	94 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034		U3KQE9	123 aa		13.59	□□□□□ -0.23
COMMD4-222	ENST00000568034	IZUMO1R	A6ND01	250 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	CHEK1	O14757	476 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	LYZ	P61626	148 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	CD300E	Q496F6	205 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	DYNLRB2	Q8TF09	96 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	ST8SIA2	Q92186	375 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	METTL26	Q96S19	204 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	ATP5S	Q99766	215 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	RHPN1-AS1	Q9BWJ2	59 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	GGTLC1	Q9BX51	225 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	VSIR	Q9H7M9	311 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	FBXL17	Q9UF56	701 aa		13.58	□□□□□ -0.24
COMMD4-222	ENST00000568034	IGHV3OR16-13	A0A075B7E8	117 aa		13.57	□□□□□ -0.24
COMMD4-222	ENST00000568034	IGHV3-74	A0A0B4J1X5	117 aa		13.57	□□□□□ -0.24
COMMD4-222	ENST00000568034	SELENOT	P62341	195 aa		13.57	□□□□□ -0.24
COMMD4-222	ENST00000568034	ZNF546	Q86UE3	836 aa		13.57	□□□□□ -0.24
COMMD4-222	ENST00000568034	BPIFC	Q8NFQ6	507 aa		13.57	□□□□□ -0.24
COMMD4-222	ENST00000568034	TECR	Q9NZ01	308 aa	Known RBP	13.57	□□□□□ -0.24
COMMD4-222	ENST00000568034	IGHV3-66	A0A0C4DH42	116 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	CFD	P00746	253 aa	Predicted RBP	13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	HNRNPC	P07910	306 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	LINC00869	P0C866	280 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	FGF7	P21781	194 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	NPPC	P23582	126 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	CAMLG	P49069	296 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	PLP1	P60201	277 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	PRR20E	P86478	221 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	PRR20C	P86479	221 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	PRR20D	P86480	221 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	PRR20B	P86481	221 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	PRR20A	P86496	221 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	OPCML	Q14982	345 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	TCTE3	Q8IZS6	198 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	OR2K2	Q8NGT1	345 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	RNF2	Q99496	336 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	PBDC1	Q9BVG4	233 aa		13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	WDR61	Q9GZS3	305 aa	Known RBP	13.56	□□□□□ -0.24
COMMD4-222	ENST00000568034	SORL1	Q92673	2214 aa		13.55	□□□□□ -0.24
COMMD4-222	ENST00000568034	DFFB	O76075	338 aa		13.55	□□□□□ -0.24
COMMD4-222	ENST00000568034	MIC13	Q5XKP0	118 aa		13.55	□□□□□ -0.24
COMMD4-222	ENST00000568034	FAM90A2P	Q658T7	463 aa		13.55	□□□□□ -0.24
COMMD4-222	ENST00000568034	TMEM61	Q8N0U2	210 aa		13.55	□□□□□ -0.24
COMMD4-222	ENST00000568034	NPCDR1	Q9BY65	106 aa		13.55	□□□□□ -0.24
COMMD4-222	ENST00000568034	RABAC1	Q9UI14	185 aa		13.55	□□□□□ -0.24
COMMD4-222	ENST00000568034	ARPC5	O15511	151 aa		13.54	□□□□□ -0.24
COMMD4-222	ENST00000568034	MPDU1	O75352	247 aa		13.54	□□□□□ -0.24
COMMD4-222	ENST00000568034	NUP62	P37198	522 aa	Predicted RBP	13.54	□□□□□ -0.24
COMMD4-222	ENST00000568034	EIF2B2	P49770	351 aa	Known RBP	13.54	□□□□□ -0.24
COMMD4-222	ENST00000568034	CD300C	Q08708	224 aa		13.54	□□□□□ -0.24
COMMD4-222	ENST00000568034	INO80E	Q8NBZ0	244 aa	Predicted RBP	13.54	□□□□□ -0.24
COMMD4-222	ENST00000568034	ZNF785	A8K8V0	405 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	HMSD	A8MTL9	139 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	BUB3	O43684	328 aa		13.53	□□□□□ -0.24
COMMD4-222	ENST00000568034	ORM2	P19652	201 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms